Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193

SANS: high-throughput retrieval of protein sequences allowing 50% mismatches

(2012) J. P. Koskinen et al.   BIOINFORMATICS

Large-Scale Comparative Phenotypic and Genomic Analyses Reveal Ecological Preferences of Shewanella Species and Identify Metabolic Pathways Conserved at the Genus Level

(2011) Jorge L. M. Rodrigues et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052

(2011) Caroline B Milne et al.   BMC Systems Biology

iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network

(2011) Saheed Imam et al.   BMC Systems Biology

A Unique Arabinose 5-Phosphate Isomerase Found within a Genomic Island Associated with the Uropathogenicity of Escherichia coli CFT073

(2011) J. A. Mosberg et al.   JOURNAL OF BACTERIOLOGY

Pectobacterium carotovorumElicits Plant Cell Death with DspE/F but theP. carotovorumDspE Does Not Suppress Callose or Induce Expression of Plant Genes Early in Plant–Microbe Interactions

(2011) Hye-Sook Kim et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Type VI Secretion System: A Multipurpose Delivery System with a Phage-Like Machinery

(2011) Angela R. Records   MOLECULAR PLANT-MICROBE INTERACTIONS

Quantitative Real-Time Polymerase Chain Reaction Assay for Detection ofPectobacterium wasabiaeUsing YD Repeat Protein Gene-Based Primers

(2011) Myeong Ho Kim et al.   PLANT DISEASE

The use of two complementary DNA assays, AFLP and MLSA, for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum

(2011) S. Nabhan et al.   PLANT PATHOLOGY

Control of blackleg and tuber soft rot of potato caused by Pectobacterium and Dickeya species: a review

(2011) R. Czajkowski et al.   PLANT PATHOLOGY

The 3-Hydroxy-2-Butanone Pathway Is Required for Pectobacterium carotovorum Pathogenesis

(2011) Maria del Pilar Marquez-Villavicencio et al.   PLoS One

Genetic Analysis of Anti-Amoebae and Anti-Bacterial Activities of the Type VI Secretion System in Vibrio cholerae

(2011) Jun Zheng et al.   PLoS One

Identification of Functional Toxin/Immunity Genes Linked to Contact-Dependent Growth Inhibition (CDI) and Rearrangement Hotspot (Rhs) Systems

(2011) Stephen J. Poole et al.   PLoS Genetics

Bacterial Microcompartment Organelles: Protein Shell Structure and Evolution

(2010) Todd O. Yeates et al.   Annual Review of Biophysics

Bacterial Microcompartments

(2010) Cheryl A. Kerfeld et al.   Annual Review of Microbiology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Aniline-Induced Tryptophan Production and Identification of Indole Derivatives from Three Purple Bacteria

(2010) Md. Mujahid et al.   CURRENT MICROBIOLOGY

Characterization of Pectobacterium species from Iran using biochemical and molecular methods

(2010) Sareh Baghaee-Ravari et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Complete Genome Sequence of the Fire Blight PathogenErwinia amylovoraCFBP 1430 and Comparison to OtherErwiniaspp.

(2010) Theo H. M. Smits et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

Ethanolamine utilization in bacterial pathogens: roles and regulation

(2010) Danielle A. Garsin   NATURE REVIEWS MICROBIOLOGY

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Genome Sequence of the Plant Growth Promoting Endophytic Bacterium Enterobacter sp. 638

(2010) Safiyh Taghavi et al.   PLoS Genetics

Burkholderia Type VI Secretion Systems Have Distinct Roles in Eukaryotic and Bacterial Cell Interactions

(2010) Sandra Schwarz et al.   PLoS Pathogens

Phylogeny and Virulence of Naturally Occurring Type III Secretion System-Deficient Pectobacterium Strains

(2009) H.-S. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

(2009) Andrew P Jackson et al.   BMC GENOMICS

Pseudomonas syringae type III secretion system effectors: repertoires in search of functions

(2009) Sébastien Cunnac et al.   CURRENT OPINION IN MICROBIOLOGY

Secreted proteins from Ralstonia solanacearum: a hundred tricks to kill a plant

(2009) Marie Poueymiro et al.   CURRENT OPINION IN MICROBIOLOGY

Genetic characterisation of Pectobacterium wasabiae causing soft rot disease of potato in New Zealand

(2009) Andrew R. Pitman et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Altering Expression ofBenzoic Acid/Salicylic Acid Carboxyl Methyltransferase 1Compromises Systemic Acquired Resistance and PAMP-Triggered Immunity inArabidopsis

(2009) Po-Pu Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

Lifestyles of the Effector Rich: Genome-Enabled Characterization of Bacterial Plant Pathogens

(2009) A. Collmer et al.   PLANT PHYSIOLOGY

Plants as a Habitat for Beneficial and/or Human Pathogenic Bacteria

(2008) Heather L. Tyler et al.   Annual Review of Phytopathology

Biochemical and genetic diversity of pectolytic enterobacteria causing soft rot disease of potatoes in New Zealand

(2008) Andrew R. Pitman et al.   AUSTRALASIAN PLANT PATHOLOGY

Evaluation of genomic island predictors using a comparative genomics approach

(2008) Morgan GI Langille et al.   BMC BIOINFORMATICS

Differential pathogenicity and genetic diversity among Pectobacterium carotovorum ssp. carotovorum isolates from monocot and dicot hosts support early genomic divergence within this taxon

(2008) Moran Yishay et al.   ENVIRONMENTAL MICROBIOLOGY

Uropathogenic Escherichia coli CFT073 Is Adapted to Acetatogenic Growth but Does Not Require Acetate during Murine Urinary Tract Infection

(2008) A. T. Anfora et al.   INFECTION AND IMMUNITY

DsbA Plays a Critical and Multifaceted Role in the Production of Secreted Virulence Factors by the PhytopathogenErwinia carotovorasubsp. atroseptica

(2008) Sarah J. Coulthurst et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum

(2008) L. Mattinen et al.   MICROBIOLOGY-SGM

Niche-Specificity and the Variable Fraction of thePectobacteriumPan-Genome

(2008) J. D. Glasner et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Citrate Uptake intoPectobacterium atrosepticumIs Critical for Bacterial Virulence

(2008) Claude Urbany et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Novel Plant Ferredoxin-Like Protein and the Regulator Hor Are Quorum-Sensing Targets in the Plant PathogenErwinia carotovora

(2008) Solveig Sjöblom et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Protein-based organelles in bacteria: carboxysomes and related microcompartments

(2008) Todd O. Yeates et al.   NATURE REVIEWS MICROBIOLOGY

Genetic Determinants of Self Identity and Social Recognition in Bacteria

(2008) K. A. Gibbs et al.   SCIENCE

Quorum Sensing Coordinates Brute Force and Stealth Modes of Infection in the Plant Pathogen Pectobacterium atrosepticum

(2008) Hui Liu et al.   PLoS Pathogens

Bacterial endophytes: recent developments and applications

(2007) Robert P. Ryan et al.   FEMS MICROBIOLOGY LETTERS