Transmission of Equine Influenza Virus during an Outbreak Is Characterized by Frequent Mixed Infections and Loose Transmission Bottlenecks

Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs

(2012) Pablo R. Murcia et al.   PLoS Pathogens

Persistence of Low-Pathogenic Avian Influenza H5N7 and H7N1 Subtypes in House Flies (Diptera: Muscidae)

(2011) Anne Ahlmann Nielsen et al.   JOURNAL OF MEDICAL ENTOMOLOGY

High-Resolution Analysis of Intrahost Genetic Diversity in Dengue Virus Serotype 1 Infection Identifies Mixed Infections

(2011) K. T. D. Thai et al.   JOURNAL OF VIROLOGY

Extensive Geographical Mixing of 2009 Human H1N1 Influenza A Virus in a Single University Community

(2011) E. C. Holmes et al.   JOURNAL OF VIROLOGY

Genome-Scale Evolution and Phylodynamics of Equine H3N8 Influenza A Virus

(2011) P. R. Murcia et al.   JOURNAL OF VIROLOGY

Contribution of Intra- and Interhost Dynamics to Norovirus Evolution

(2011) R. A. Bull et al.   JOURNAL OF VIROLOGY

Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza

(2011) S. Cauchemez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data

(2011) R. J. F. Ypma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density-Dependent Transmission

(2011) Jayna Raghwani et al.   PLoS Pathogens

Evolutionary Analysis of Inter-Farm Transmission Dynamics in a Highly Pathogenic Avian Influenza Epidemic

(2011) Arnaud Bataille et al.   PLoS Pathogens

Reconstructing disease outbreaks from genetic data: a graph approach

(2010) T Jombart et al.   HEREDITY

Intra- and Interhost Evolutionary Dynamics of Equine Influenza Virus

(2010) P. R. Murcia et al.   JOURNAL OF VIROLOGY

Intrahost Evolutionary Dynamics of Canine Influenza Virus in Naive and Partially Immune Dogs

(2010) K. Hoelzer et al.   JOURNAL OF VIROLOGY

Control of equine influenza: scenario testing using a realistic metapopulation model of spread

(2009) M. Baguelin et al.   Journal of the Royal Society Interface

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

The equine influenza epidemic in Australia: Spatial and temporal descriptive analyses of a large propagating epidemic

(2009) Brendan Cowled et al.   PREVENTIVE VETERINARY MEDICINE

Analysis of Local Spread of Equine Influenza in the Park Ridge Region of Queensland

(2009) J. Davis et al.   Transboundary and Emerging Diseases

Antigenic and genetic variations in European and North American equine influenza virus strains (H3N8) isolated from 2006 to 2007

(2009) Neil A. Bryant et al.   VETERINARY MICROBIOLOGY

Discovering the Phylodynamics of RNA Viruses

(2009) Edward C. Holmes et al.   PLoS Computational Biology

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Lack of viral selection in human immunodeficiency virus type 1 mother-to-child transmission with primary infection during late pregnancy and/or breastfeeding

(2008) A. Ceballos et al.   JOURNAL OF GENERAL VIROLOGY

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

(2008) B. F. Keele et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus

(2008) E. M Cottam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES