Genomic Diversity and Evolution of Mycobacterium ulcerans Revealed by Next-Generation Sequencing

Diagnosis of Mycobacterium ulcerans infection (Buruli ulcer) at a treatment centre in Ghana: a retrospective analysis of laboratory results of clinically diagnosed cases

(2010) Ernestina Mensah-Quainoo et al.   TROPICAL MEDICINE & INTERNATIONAL HEALTH

Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens

(2008) Mark Achtman   Annual Review of Microbiology

Development and Experimental Validation of a Predictive Threshold Cycle Equation for Quantification of Virulence and Marker Genes by High-Throughput Nanoliter-Volume PCR on the OpenArray Platform

(2008) R. D. Stedtfeld et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Optimized Method for Preparation of DNA from Pathogenic and Environmental Mycobacteria

(2008) M. Kaser et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Next-Generation Sequencing: The Race Is On

(2008) Andreas von Bubnoff   CELL

Independent Loss of Immunogenic Proteins in Mycobacterium ulcerans Suggests Immune Evasion

(2008) C. A. Huber et al.   Clinical and Vaccine Immunology

First report of a mycolactone-producingMycobacteriuminfection in fish agriculture in Belgium

(2008) Pieter Stragier et al.   FEMS MICROBIOLOGY LETTERS

Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis

(2008) T. P. Stinear et al.   GENOME RESEARCH

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

The Genome Sequencer FLX™ System—Longer reads, more applications, straight forward bioinformatics and more complete data sets

(2008) Marcus Droege et al.   JOURNAL OF BIOTECHNOLOGY

Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak

(2008) M. L. Kotewicz et al.   MICROBIOLOGY-SGM

Genomic DNA sequence comparison between two inbred soybean cyst nematode biotypes facilitated by massively parallel 454 micro-bead sequencing

(2008) Sadia Bekal et al.   MOLECULAR GENETICS AND GENOMICS

Mycolactones: immunosuppressive and cytotoxic polyketides produced by aquatic mycobacteria

(2008) Hui Hong et al.   NATURAL PRODUCT REPORTS

The complete genome of an individual by massively parallel DNA sequencing

(2008) David A. Wheeler et al.   NATURE

The diploid genome sequence of an Asian individual

(2008) Jun Wang et al.   NATURE

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

(2008) Aaron R Quinlan et al.   NATURE METHODS

Whole-genome sequencing and variant discovery in C. elegans

(2008) LaDeana W Hillier et al.   NATURE METHODS

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks

(2008) S. D. Manning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS

Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing

(2008) Stephen J. Spatz et al.   VIRUS GENES

Differential Gene Repertoire in Mycobacterium ulcerans Identifies Candidate Genes for Patho-Adaptation

(2008) Michael Käser et al.   PLoS Neglected Tropical Diseases