Whole Genome Sequence of the Treponema pallidum subsp. endemicum Strain Bosnia A: The Genome Is Related to Yaws Treponemes but Contains Few Loci Similar to Syphilis Treponemes

The Endemic Treponematoses

(2014) L. Giacani et al.   CLINICAL MICROBIOLOGY REVIEWS

Endemic syphilis in Europe

(2014) Jasna Lipozenčić et al.   CLINICS IN DERMATOLOGY

Syphilis-causing strains belong to separate SS14-like or Nichols-like groups as defined by multilocus analysis of 19 Treponema pallidum strains

(2014) Lukáš Nechvátal et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Sequencing-based Molecular Typing of Treponema pallidum Strains in the Czech Republic: All Identified Genotypes are Related to the Sequence of the SS14 Strain

(2013) M Flasarová et al.   ACTA DERMATO-VENEREOLOGICA

TIGRA: A targeted iterative graph routing assembler for breakpoint assembly

(2013) K. Chen et al.   GENOME RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Resequencing of Treponema pallidum ssp. pallidum Strains Nichols and SS14: Correction of Sequencing Errors Resulted in Increased Separation of Syphilis Treponeme Subclusters

(2013) Helena Pětrošová et al.   PLoS One

Is there a difference between hare syphilis and rabbit syphilis? Cross infection experiments between rabbits and hares

(2013) Johannes T. Lumeij et al.   VETERINARY MICROBIOLOGY

Whole Genome Sequence of the Treponema Fribourg-Blanc: Unspecified Simian Isolate Is Highly Similar to the Yaws Subspecies

(2013) Marie Zobaníková et al.   PLoS Neglected Tropical Diseases

Advances in the Diagnosis of Endemic Treponematoses: Yaws, Bejel, and Pinta

(2013) Oriol Mitjà et al.   PLoS Neglected Tropical Diseases

Fine Analysis of Genetic Diversity of the tpr Gene Family among Treponemal Species, Subspecies and Strains

(2013) Arturo Centurion-Lara et al.   PLoS Neglected Tropical Diseases

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Identification of the Treponema pallidum subsp. pallidum TP0092 (RpoE) Regulon and Its Implications for Pathogen Persistence in the Host and Syphilis Pathogenesis

(2012) L. Giacani et al.   JOURNAL OF BACTERIOLOGY

Comparative Investigation of the Genomic Regions Involved in Antigenic Variation of the TprK Antigen among Treponemal Species, Subspecies, and Strains

(2012) L. Giacani et al.   JOURNAL OF BACTERIOLOGY

Structure of rrn operons in pathogenic non-cultivable treponemes: sequence but not genomic position of intergenic spacers correlates with classification of Treponema pallidum and Treponema paraluiscuniculi strains

(2012) D. Cejkova et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Complete genome sequence of Treponema pallidum strain DAL-1

(2012) Marie Zobaníková et al.   Standards in Genomic Sciences

Whole Genome Sequence of Treponema pallidum ssp. pallidum, Strain Mexico A, Suggests Recombination between Yaws and Syphilis Strains

(2012) Helena Pětrošová et al.   PLoS Neglected Tropical Diseases

Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence

(2012) Darina Čejková et al.   PLoS Neglected Tropical Diseases

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete Genome Sequence of Treponema paraluiscuniculi, Strain Cuniculi A: The Loss of Infectivity to Humans Is Associated with Genome Decay

(2011) David Šmajs et al.   PLoS One

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Complete Genome Sequence and Annotation of the Treponema pallidum subsp. pallidum Chicago Strain

(2010) L. Giacani et al.   JOURNAL OF BACTERIOLOGY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Genome Analysis of Treponema pallidum subsp. pallidum and subsp. pertenue Strains: Most of the Genetic Differences Are Localized in Six Regions

(2010) Lenka Mikalová et al.   PLoS One

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenerealTreponema pallidumsubspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis

(2008) Kristin N. Harper et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

A Novel Treponema pallidum Antigen, TP0136, Is an Outer Membrane Protein That Binds Human Fibronectin

(2008) M. B. Brinkman et al.   INFECTION AND IMMUNITY

Molecular Studies in Treponema pallidum Evolution: Toward Clarity?

(2008) Connie J. Mulligan et al.   PLoS Neglected Tropical Diseases

On the Origin of the Treponematoses: A Phylogenetic Approach

(2008) Kristin N. Harper et al.   PLoS Neglected Tropical Diseases