EF-P Dependent Pauses Integrate Proximal and Distal Signals during Translation

The ABC-F protein EttA gates ribosome entry into the translation elongation cycle

(2014) Grégory Boël et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics

(2014) Bo Chen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

eIF5A and EF-P: two unique translation factors are now traveling the same road

(2014) Danuza Rossi et al.   Wiley Interdisciplinary Reviews-RNA

(R)-β-Lysine-modified Elongation Factor P Functions in Translation Elongation

(2013) Tammy J. Bullwinkle et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

eIF5A Promotes Translation of Polyproline Motifs

(2013) Erik Gutierrez et al.   MOLECULAR CELL

Simulating the pulling of stalled elongated peptide from the ribosome by the translocon

(2013) A. Rychkova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P

(2013) L. Peil et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nascent peptides that block protein synthesis in bacteria

(2013) C. J. Woolstenhulme et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergent Protein Motifs Direct Elongation Factor P-Mediated Translational Regulation in Salmonella enterica and Escherichia coli

(2013) S. J. Hersch et al.   mBio

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA

(2012) Colin P. Corcoran et al.   MOLECULAR MICROBIOLOGY

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

Lys34 of translation elongation factor EF-P is hydroxylated by YfcM

(2012) Lauri Peil et al.   Nature Chemical Biology

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

EF-P Is Essential for Rapid Synthesis of Proteins Containing Consecutive Proline Residues

(2012) L. K. Doerfel et al.   SCIENCE

Translation Elongation Factor EF-P Alleviates Ribosome Stalling at Polyproline Stretches

(2012) S. Ude et al.   SCIENCE

Determinants of Translation Elongation Speed and Ribosomal Profiling Biases in Mouse Embryonic Stem Cells

(2012) Alexandra Dana et al.   PLoS Computational Biology

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In Vivo

(2011) Eugene Oh et al.   CELL

The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling

(2011) Daniel N Wilson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Peptides in the Ribosomal Tunnel Talk Back

(2011) Daniel N. Wilson   MOLECULAR CELL

Nascent Peptide in the Ribosome Exit Tunnel Affects Functional Properties of the A-Site of the Peptidyl Transferase Center

(2011) Haripriya Ramu et al.   MOLECULAR CELL

The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-β-lysine

(2011) Hervé Roy et al.   Nature Chemical Biology

SecM-Stalled Ribosomes Adopt an Altered Geometry at the Peptidyl Transferase Center

(2011) Shashi Bhushan et al.   PLOS BIOLOGY

Divergent stalling sequences sense and control cellular physiology

(2010) Koreaki Ito et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

How the Sequence of a Gene Can Tune Its Translation

(2010) Kurt Fredrick et al.   CELL

A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P

(2010) Tatsuo Yanagisawa et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Control of translation efficiency in yeast by codon-anticodon interactions

(2010) D. P. Letzring et al.   RNA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetic Identification of Nascent Peptides That Induce Ribosome Stalling

(2009) Douglas R. Tanner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Plasticity of a Translation Arrest Motif Yields Insights into Nascent Polypeptide Recognition inside the Ribosome Tunnel

(2009) Mee-Ngan Yap et al.   MOLECULAR CELL

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome

(2009) G. Blaha et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Structural modeling and mutational analysis of yeast eukaryotic translation initiation factor 5A reveal new critical residues and reinforce its involvement in protein synthesis

(2008) Camila A. O. Dias et al.   FEBS Journal

Electrostatics in the Ribosomal Tunnel Modulate Chain Elongation Rates

(2008) Jianli Lu et al.   JOURNAL OF MOLECULAR BIOLOGY

Synonymous Mutations and Ribosome Stalling Can Lead to Altered Folding Pathways and Distinct Minima

(2008) Chung-Jung Tsai et al.   JOURNAL OF MOLECULAR BIOLOGY