Zinc Finger Transcription Factors Displaced SREBP Proteins as the Major Sterol Regulators during Saccharomycotina Evolution

Hypoxia and Gene Expression in Eukaryotic Microbes

(2013) Geraldine Butler   Annual Review of Microbiology

Comparison of Sterol Import under Aerobic and Anaerobic Conditions in Three Fungal Species, Candida albicans, Candida glabrata, and Saccharomyces cerevisiae

(2013) Martin Zavrel et al.   EUKARYOTIC CELL

Comparative Genome Analysis and Gene Finding in Candida Species Using CGOB

(2013) Sarah L. Maguire et al.   MOLECULAR BIOLOGY AND EVOLUTION

Following Gene Duplication, Paralog Interference Constrains Transcriptional Circuit Evolution

(2013) Christopher R. Baker et al.   SCIENCE

Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter

(2012) Bridget M Barker et al.   BMC GENOMICS

Protein Modularity, Cooperative Binding, and Hybrid Regulatory States Underlie Transcriptional Network Diversification

(2012) Christopher R. Baker et al.   CELL

Regulation of lipid metabolism: a tale of two yeasts

(2012) Sumana Raychaudhuri et al.   CURRENT OPINION IN CELL BIOLOGY

Dsc Orthologs Are Required for Hypoxia Adaptation, Triazole Drug Responses, and Fungal Virulence in Aspergillus fumigatus

(2012) Sven D. Willger et al.   EUKARYOTIC CELL

The TEA/ATTS transcription factor YlTec1p represses the yeast-to-hypha transition in the dimorphic yeastYarrowia lipolytica

(2012) Xiao-Feng Zhao et al.   FEMS YEAST RESEARCH

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

(2012) Naomi Habib et al.   Molecular Systems Biology

Identification of dimorphism-involved genes of Yarrowia lipolytica by means of microarray analysis

(2012) Adán Topiltin Morales-Vargas et al.   RESEARCH IN MICROBIOLOGY

Yarrowia lipolytica

(2012) Jean-Marc Nicaud   YEAST

Engineering polyhydroxyalkanoate content and monomer composition in the oleaginous yeast Yarrowia lipolytica by modifying the ß-oxidation multifunctional protein

(2011) Ramdane Haddouche et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis

(2011) Alessandro Guida et al.   BMC GENOMICS

Yeast Sterol Regulatory Element-binding Protein (SREBP) Cleavage Requires Cdc48 and Dsc5, a Ubiquitin Regulatory X Domain-containing Subunit of the Golgi Dsc E3 Ligase

(2011) Emerson V. Stewart et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Regulation of the Sre1 Hypoxic Transcription Factor by Oxygen-Dependent Control of DNA Binding

(2011) Chih-Yung S. Lee et al.   MOLECULAR CELL

Yeast SREBP Cleavage Activation Requires the Golgi Dsc E3 Ligase Complex

(2011) Emerson V. Stewart et al.   MOLECULAR CELL

Contribution of the glycolytic flux and hypoxia adaptation to efficient biofilm formation by Candida albicans

(2011) Julie Bonhomme et al.   MOLECULAR MICROBIOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

SREBP Coordinates Iron and Ergosterol Homeostasis to Mediate Triazole Drug and Hypoxia Responses in the Human Fungal Pathogen Aspergillus fumigatus

(2011) Michael Blatzer et al.   PLoS Genetics

The role of ABC proteins Aus1p and Pdr11p in the uptake of external sterols in yeast: Dehydroergosterol fluorescence study

(2010) Peter Kohut et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Regulation of the Hypoxic Response in Candida albicans

(2010) John M. Synnott et al.   EUKARYOTIC CELL

Sterol Regulatory Element Binding Proteins in Fungi: Hypoxic Transcription Factors Linked to Pathogenesis

(2010) Clara M. Bien et al.   EUKARYOTIC CELL

Transcription factors CgUPC2A and CgUPC2B regulate ergosterol biosynthetic genes in Candida glabrata

(2010) Minoru Nagi et al.   GENES TO CELLS

Dramatic changes in transcription factor binding over evolutionary time

(2010) Matthew T Weirauch et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Oxygen-dependent binding of Nro1 to the prolyl hydroxylase Ofd1 regulates SREBP degradation in yeast

(2009) Chih-Yung S Lee et al.   EMBO JOURNAL

Conservation of the Sterol Regulatory Element-Binding Protein Pathway and Its Pathobiological Importance inCryptococcus neoformans

(2009) Yun C. Chang et al.   EUKARYOTIC CELL

Regulatory role of the PKA pathway in dimorphism and mating in Yarrowia lipolytica

(2009) José A. Cervantes-Chávez et al.   FUNGAL GENETICS AND BIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

(2009) Elodie Portales-Casamar et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Regulation of Carbohydrate Metabolism in the Human Pathogen Candida albicans

(2009) Christopher Askew et al.   PLoS Pathogens

Insig Regulates HMG-CoA Reductase by Controlling Enzyme Phosphorylation in Fission Yeast

(2008) John S. Burg et al.   Cell Metabolism

Responses to hypoxia in fungal pathogens

(2008) Joachim F. Ernst et al.   CELLULAR MICROBIOLOGY

Genomewide Location Analysis ofCandida albicansUpc2p, a Regulator of Sterol Metabolism and Azole Drug Resistance

(2008) Sadri Znaidi et al.   EUKARYOTIC CELL

Candida albicans UPC2 is transcriptionally induced in response to antifungal drugs and anaerobicity through Upc2p-dependent and -independent mechanisms

(2008) S. J. Hoot et al.   MICROBIOLOGY-SGM

Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation

(2008) Hervé Hogues et al.   MOLECULAR CELL

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL

A Sterol-Regulatory Element Binding Protein Is Required for Cell Polarity, Hypoxia Adaptation, Azole Drug Resistance, and Virulence in Aspergillus fumigatus

(2008) Sven D. Willger et al.   PLoS Pathogens

Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast

(2007) Matthew J. Brauer et al.   MOLECULAR BIOLOGY OF THE CELL