HIV Infection Disrupts the Sympatric Host–Pathogen Relationship in Human Tuberculosis

Effect of Mutation and Genetic Background on Drug Resistance in Mycobacterium tuberculosis

(2012) Lukas Fenner et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Tracking human migrations by the analysis of the distribution of HLA alleles, lineages and haplotypes in closed and open populations

(2012) M. A. F. Vina et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Host-pathogen coevolution in human tuberculosis

(2012) S. Gagneux   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Tuberculosis in HIV-Negative and HIV-Infected Patients in a Low-Incidence Country: Clinical Characteristics and Treatment Outcomes

(2012) Lukas Fenner et al.   PLoS One

Two New Rapid SNP-Typing Methods for Classifying Mycobacterium tuberculosis Complex into the Main Phylogenetic Lineages

(2012) David Stucki et al.   PLoS One

The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex

(2012) Stephen D. Bentley et al.   PLoS Neglected Tropical Diseases

Arc of a Vicious Circle

(2011) James V. Falvo et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

HIV and Tuberculosis: a Deadly Human Syndemic

(2011) C. K. Kwan et al.   CLINICAL MICROBIOLOGY REVIEWS

HIV-1/Mycobacterium tuberculosisCoinfection Immunology: How Does HIV-1 Exacerbate Tuberculosis?

(2011) Collin R. Diedrich et al.   INFECTION AND IMMUNITY

Old and new selective pressures on Mycobacterium tuberculosis

(2011) Daniela Brites et al.   INFECTION GENETICS AND EVOLUTION

Mycobacterium tuberculosis Transmission in a Country with Low Tuberculosis Incidence: Role of Immigration and HIV Infection

(2011) L. Fenner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Tuberculosis

(2011) Stephen D Lawn et al.   LANCET

Variant G57E of Mannose Binding Lectin Associated with Protection against Tuberculosis Caused by Mycobacterium africanum but not by M. tuberculosis

(2011) Thorsten Thye et al.   PLoS One

“Pseudo-Beijing”: Evidence for Convergent Evolution in the Direct Repeat Region of Mycobacterium tuberculosis

(2011) Lukas Fenner et al.   PLoS One

Host-parasite local adaptation after experimental coevolution of Caenorhabditis elegans and its microparasite Bacillus thuringiensis

(2011) R. D. Schulte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Human Macrophage Responses to Clinical Isolates from the Mycobacterium tuberculosis Complex Discriminate between Ancient and Modern Lineages

(2011) Damien Portevin et al.   PLoS Pathogens

Nadir CD4 T Cell Count as Predictor and High CD4 T Cell Intrinsic Apoptosis as Final Mechanism of Poor CD4 T Cell Recovery in Virologically Suppressed HIV‐Infected Patients: Clinical Implications

(2010) Eugènia Negredo et al.   CLINICAL INFECTIOUS DISEASES

An Introduction to Causal Inference

(2010) Judea Pearl  

Mycobacterium africanum—Review of an Important Cause of Human Tuberculosis in West Africa

(2010) Bouke C. de Jong et al.   PLoS Neglected Tropical Diseases

Host Imprints on Bacterial Genomes—Rapid, Divergent Evolution in Individual Patients

(2010) Jaroslaw Zdziarski et al.   PLoS Pathogens

A weakly informative default prior distribution for logistic and other regression models

(2009) Andrew Gelman et al.   Annals of Applied Statistics

Incomplete Peripheral CD4+Cell Count Restoration in HIV‐Infected Patients Receiving Long‐Term Antiretroviral Treatment

(2009) Colleen F. Kelley et al.   CLINICAL INFECTIOUS DISEASES

Tracking human migration patterns through the oral bacterial flora

(2009) P.W. Caufield   CLINICAL MICROBIOLOGY AND INFECTION

Annie Darwin's death, the evolution of tuberculosis and the need for systems epidemiology

(2009) L. Fenner et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Cohort Profile: The Swiss HIV Cohort Study

(2009) et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Major Mycobacterium tuberculosis Lineages Associate with Patient Country of Origin

(2009) M. B. Reed et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Infection withMycobacterium tuberculosisBeijing Genotype Strains Is Associated with Polymorphisms inSLC11A1/NRAMP1in Indonesian Patients with Tuberculosis

(2009) Reinout van Crevel et al.   JOURNAL OF INFECTIOUS DISEASES

Comparative genomic and phylogeographic analysis of Mycobacterium leprae

(2009) Marc Monot et al.   NATURE GENETICS

Autophagy Gene Variant IRGM −261T Contributes to Protection from Tuberculosis Caused by Mycobacterium tuberculosis but Not by M. africanum Strains

(2009) Christopher D. Intemann et al.   PLoS Pathogens

Three-Year Population-Based Evaluation of Standardized Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis

(2008) C. Allix-Beguec et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Early Depletion ofMycobacterium tuberculosis–Specific T Helper 1 Cell Responses after HIV‐1 Infection

(2008) Christof Geldmacher et al.   JOURNAL OF INFECTIOUS DISEASES

High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography

(2008) Ruth Hershberg et al.   PLOS BIOLOGY

The Influence of Host and Bacterial Genotype on the Development of Disseminated Disease with Mycobacterium tuberculosis

(2008) Maxine Caws et al.   PLoS Pathogens

Origin, Spread and Demography of the Mycobacterium tuberculosis Complex

(2008) Thierry Wirth et al.   PLoS Pathogens