The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5, Srf, Histone Modifications, and MicroRNAs

MicroRazerS: rapid alignment of small RNA reads

(2009) A.-K. Emde et al.   BIOINFORMATICS

Cytokine-mediated increases in fetal hemoglobin are associated with globin gene histone modification and transcription factor reprogramming

(2009) O. Sripichai et al.   BLOOD

Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes

(2009) Zhibin Wang et al.   CELL

MicroRNA-320 Is Involved in the Regulation of Cardiac Ischemia/Reperfusion Injury by Targeting Heat-Shock Protein 20

(2009) Xiao-Ping Ren et al.   CIRCULATION

MicroRNA Regulation of Cardiovascular Development

(2009) Kimberly R. Cordes et al.   CIRCULATION RESEARCH

MicroRNA epigenetic alterations: predicting biomarkers and therapeutic targets in human diseases

(2009) Y Wang et al.   CLINICAL GENETICS

RazerS--fast read mapping with sensitivity control

(2009) D. Weese et al.   GENOME RESEARCH

MicroRNA-1 Regulates Cardiomyocyte Apoptosis by Targeting Bcl-2

(2009) Yehua Tang et al.   International Heart Journal

Exercise-induced histone modifications in human skeletal muscle

(2009) Sean L. McGee et al.   JOURNAL OF PHYSIOLOGY-LONDON

miR-24 Inhibits Cell Proliferation by Targeting E2F2, MYC, and Other Cell-Cycle Genes via Binding to “Seedless” 3′UTR MicroRNA Recognition Elements

(2009) Ashish Lal et al.   MOLECULAR CELL

Insights into GATA-1-Mediated Gene Activation versus Repression via Genome-wide Chromatin Occupancy Analysis

(2009) Ming Yu et al.   MOLECULAR CELL

Backup in gene regulatory networks explains differences between binding and knockout results

(2009) Anthony Gitter et al.   Molecular Systems Biology

On the road to reading the RNA-interference code

(2009) Haruhiko Siomi et al.   NATURE

Insights from genomic profiling of transcription factors

(2009) Peggy J. Farnham   NATURE REVIEWS GENETICS

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

Biogenesis of small RNAs in animals

(2009) V. Narry Kim et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MicroRNA-92a Controls Angiogenesis and Functional Recovery of Ischemic Tissues in Mice

(2009) A. Bonauer et al.   SCIENCE

E2F1-Regulated MicroRNAs Impair TGFβ-Dependent Cell-Cycle Arrest and Apoptosis in Gastric Cancer

(2008) Fabio Petrocca et al.   CANCER CELL

Epiblastic Cited2 deficiency results in cardiac phenotypic heterogeneity and provides a mechanism for haploinsufficiency

(2008) Simon T. MacDonald et al.   CARDIOVASCULAR RESEARCH

MicroRNAs: novel regulators in cardiac development and disease

(2008) T. Thum et al.   CARDIOVASCULAR RESEARCH

Role of microRNAs in vascular diseases, inflammation, and angiogenesis

(2008) C. Urbich et al.   CARDIOVASCULAR RESEARCH

Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells

(2008) Alexander Marson et al.   CELL

MicroRNA-21 targets tumor suppressor genes in invasion and metastasis

(2008) Shuomin Zhu et al.   CELL RESEARCH

MicroRNA-206 Is Highly Expressed in Newly Formed Muscle Fibers: Implications Regarding Potential for Muscle Regeneration and Maturation in Muscular Dystrophy

(2008) Katsutoshi Yuasa et al.   CELL STRUCTURE AND FUNCTION

Muscling Through the microRNA World

(2008) Thomas E. Callis et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex

(2008) M. Lange et al.   GENES & DEVELOPMENT

Transcription factors, chromatin and cancer

(2008) James L. Thorne et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Identification of p300-targeted Acetylated Residues in GATA4 during Hypertrophic Responses in Cardiac Myocytes

(2008) Tomohide Takaya et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Down-regulation ofmiR-1/miR-133Contributes to Re-expression of Pacemaker Channel GenesHCN2andHCN4in Hypertrophic Heart

(2008) Xiaobin Luo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes

(2008) Martje Toenjes et al.   Molecular BioSystems

MicroRNA-21 contributes to myocardial disease by stimulating MAP kinase signalling in fibroblasts

(2008) Thomas Thum et al.   NATURE

An integrated software system for analyzing ChIP-chip and ChIP-seq data

(2008) Hongkai Ji et al.   NATURE BIOTECHNOLOGY

The many roles of histone deacetylases in development and physiology: implications for disease and therapy

(2008) Michael Haberland et al.   NATURE REVIEWS GENETICS

miR-29 miRNAs activate p53 by targeting p85α and CDC42

(2008) Seong-Yeon Park et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MicroRNA and cardiac pathologies

(2008) Michael V. G. Latronico et al.   PHYSIOLOGICAL GENOMICS

MicroRNAs flex their muscles

(2008) Eva van Rooij et al.   TRENDS IN GENETICS

Combinatorial effects of four histone modifications in transcription and differentiation

(2007) Jenny J. Fischer et al.   GENOMICS