A Novel Bayesian Method for Detection of APOBEC3-Mediated Hypermutation and Its Application to Zoonotic Transmission of Simian Foamy Viruses

Gene Loss and Adaptation to Hominids Underlie the Ancient Origin of HIV-1

(2013) Lucie Etienne et al.   Cell Host & Microbe

Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution

(2013) Laurent Guéguen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Murine leukemia virus glycosylated Gag blocks apolipoprotein B editing complex 3 and cytosolic sensor access to the reverse transcription complex

(2013) S. Stavrou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of the feline foamy virus Bet domain essential for APOBEC3 counteraction

(2013) Dragana Lukic et al.   Retrovirology

The Foamy Virus Gag Proteins: What Makes Them Different?

(2013) Erik Müllers   Viruses-Basel

Influence of Naturally Occurring Simian Foamy Viruses (SFVs) on SIV Disease Progression in the Rhesus Macaque (Macaca mulatta) Model

(2013) Anil Choudhary et al.   Viruses-Basel

Novel simian foamy virus infections from multiple monkey species in women from the Democratic Republic of Congo

(2012) William M Switzer et al.   Retrovirology

HTLV-3/4 and simian foamy retroviruses in humans: Discovery, epidemiology, cross-species transmission and molecular virology

(2012) Antoine Gessain et al.   VIROLOGY

Endogenous Origins of HIV-1 G-to-A Hypermutation and Restriction in the Nonpermissive T Cell Line CEM2n

(2012) Eric W. Refsland et al.   PLoS Pathogens

In vivo hypermutation of xenotropic murine leukemia virus-related virus DNA in peripheral blood mononuclear cells of rhesus macaque by APOBEC3 proteins

(2011) Ao Zhang et al.   VIROLOGY

Frequent and Recent Human Acquisition of Simian Foamy Viruses Through Apes' Bites in Central Africa

(2011) Edouard Betsem et al.   PLoS Pathogens

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Glycosylated Gag Protein of a Murine Leukemia Virus Inhibits the Antiretroviral Function of APOBEC3

(2010) Angelo Kolokithas et al.   JOURNAL OF VIROLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Species-specific Inhibition of APOBEC3C by the Prototype Foamy Virus Protein Bet

(2008) Mario Perković et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Replication in a Superficial Epithelial Cell Niche Explains the Lack of Pathogenicity of Primate Foamy Virus Infections

(2008) S. M. Murray et al.   JOURNAL OF VIROLOGY

Human Immunodeficiency Virus (HIV) Type 1 Proviral Hypermutation Correlates with CD4 Count in HIV-Infected Women from Kenya

(2008) A. M. Land et al.   JOURNAL OF VIROLOGY

Conserved Footprints of APOBEC3G on Hypermutated Human Immunodeficiency Virus Type 1 and Human Endogenous Retrovirus HERV-K(HML2) Sequences

(2008) A. E. Armitage et al.   JOURNAL OF VIROLOGY