Lipid Clustering Correlates with Membrane Curvature as Revealed by Molecular Simulations of Complex Lipid Bilayers

Unknown Unknowns: the Challenge of Systematic and Statistical Error in Molecular Dynamics Simulations

(2014) Tod D. Romo et al.   BIOPHYSICAL JOURNAL

Indolicidin Binding Induces Thinning of a Lipid Bilayer

(2014) Chris Neale et al.   BIOPHYSICAL JOURNAL

Improved Coarse-Grained Modeling of Cholesterol-Containing Lipid Bilayers

(2014) Michael D. Daily et al.   Journal of Chemical Theory and Computation

Computer simulations of lipid membrane domains

(2013) W.F. Drew Bennett et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Toward Optimized Potential Functions for Protein–Protein Interactions in Aqueous Solutions: Osmotic Second Virial Coefficient Calculations Using the MARTINI Coarse-Grained Force Field

(2013) Austin C. Stark et al.   Journal of Chemical Theory and Computation

Martini Force Field Parameters for Glycolipids

(2013) César A. López et al.   Journal of Chemical Theory and Computation

Phosphoinositides alter lipid bilayer properties

(2013) Radda Rusinova et al.   JOURNAL OF GENERAL PHYSIOLOGY

Phase Separation in a Lipid/Cholesterol System: Comparison of Coarse-Grained and United-Atom Simulations

(2013) Davit Hakobyan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Evidence for Cardiolipin Binding Sites on the Membrane-Exposed Surface of the Cytochrome bc1

(2013) Clement Arnarez et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Multiscale Simulations Reveal Conserved Patterns of Lipid Interactions with Aquaporins

(2013) Phillip J. Stansfeld et al.   STRUCTURE

Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels

(2013) C. Arnarez et al.   Scientific Reports

Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes

(2013) Joseph E. Goose et al.   PLoS Computational Biology

How cholesterol is distributed between monolayers in asymmetric lipid membranes

(2012) Semen O. Yesylevskyy et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Computer simulations of the phase separation in model membranes

(2012) Svetlana Baoukina et al.   FARADAY DISCUSSIONS

Molecular view on protein sorting into liquid-ordered membrane domains mediated by gangliosides and lipid anchors

(2012) Djurre H. de Jong et al.   FARADAY DISCUSSIONS

Atomistic Simulations of a Multicomponent Asymmetric Lipid Bilayer

(2012) Anirban Polley et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Local Lipid Reorganization by a Transmembrane Protein Domain

(2012) Heidi Koldsø et al.   Journal of Physical Chemistry Letters

Structural Determinants of the Supramolecular Organization of G Protein-Coupled Receptors in Bilayers

(2012) Xavier Periole et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Molecular View of Phase Coexistence in Lipid Monolayers

(2012) Svetlana Baoukina et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Patchwork organization of the yeast plasma membrane into numerous coexisting domains

(2012) Felix Spira et al.   NATURE CELL BIOLOGY

Cholesterol increases kinetic, energetic, and mechanical stability of the human  2-adrenergic receptor

(2012) M. Zocher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipid–lipid interactions in bilayer membranes: Married couples and casual liaisons

(2012) Peter J. Quinn   PROGRESS IN LIPID RESEARCH

Interpretation of Fluctuation Spectra in Lipid Bilayer Simulations

(2011) Erik G. Brandt et al.   BIOPHYSICAL JOURNAL

Determination of Electron Density Profiles and Area from Simulations of Undulating Membranes

(2011) Anthony R. Braun et al.   BIOPHYSICAL JOURNAL

Membrane protein sequestering by ionic protein–lipid interactions

(2011) Geert van den Bogaart et al.   NATURE

Regulation of human EGF receptor by lipids

(2011) U. Coskun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Membrane lipidome of an epithelial cell line

(2011) Julio L. Sampaio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes

(2011) L. V. Schafer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Helix Heterodimer in a Lipid Bilayer: Prediction of the Structure of an Integrin Transmembrane Domain via Multiscale Simulations

(2011) Antreas C. Kalli et al.   STRUCTURE

Cell Membranes: The Lipid Perspective

(2011) Ünal Coskun et al.   STRUCTURE

Partitioning of Lipids at Domain Boundaries in Model Membranes

(2010) Lars V. Schäfer et al.   BIOPHYSICAL JOURNAL

A Comprehensive Comparison of Transmembrane Domains Reveals Organelle-Specific Properties

(2010) Hayley J. Sharpe et al.   CELL

Lipid map of the mammalian cell

(2010) G. van Meer et al.   JOURNAL OF CELL SCIENCE

Lipidomics: coming to grips with lipid diversity

(2010) Andrej Shevchenko et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Lipid Rafts As a Membrane-Organizing Principle

(2010) D. Lingwood et al.   SCIENCE

PIP2-Binding Site in Kir Channels: Definition by Multiscale Biomolecular Simulations

(2009) Phillip J. Stansfeld et al.   BIOCHEMISTRY

Observations of the distribution of GM3 in membrane microdomains by atomic force microscopy

(2009) Kazutoshi Iijima et al.   JOURNAL OF COLLOID AND INTERFACE SCIENCE

Molecular View of Cholesterol Flip-Flop and Chemical Potential in Different Membrane Environments

(2009) W. F. Drew Bennett et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

PIP2 Is a Necessary Cofactor for Ion Channel Function: How and Why?

(2008) Byung-Chang Suh et al.   Annual Review of Biophysics

Helix−Helix Interactions in Membrane Proteins: Coarse-Grained Simulations of Glycophorin A Helix Dimerization†

(2008) Emi Psachoulia et al.   BIOCHEMISTRY

Lipids on the move: Simulations of membrane pores, domains, stalks and curves

(2008) Siewert J. Marrink et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Membrane Potential and Electrostatics of Phospholipid Bilayers with Asymmetric Transmembrane Distribution of Anionic Lipids

(2008) Andrey A. Gurtovenko et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Direct observation of the nanoscale dynamics of membrane lipids in a living cell

(2008) Christian Eggeling et al.   NATURE

Membrane lipids: where they are and how they behave

(2008) Gerrit van Meer et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The molecular face of lipid rafts in model membranes

(2008) H. J. Risselada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly

(2008) Kathryn A. Scott et al.   STRUCTURE