Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Overexpression of the Transcription Factor MEF2D in Hepatocellular Carcinoma Sustains Malignant Character by Suppressing G2-M Transition Genes

(2014) L. Ma et al.   CANCER RESEARCH

Functional interplay between the cell cycle and cell phenotypes

(2013) Wei-Chiang Chen et al.   Integrative Biology

Highly multiplexed quantitation of gene expression on single cells

(2013) Maria H. Dominguez et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

(2013) Alex K. Shalek et al.   NATURE

Dynamic regulatory network controlling TH17 cell differentiation

(2013) Nir Yosef et al.   NATURE

Cell-Cycle Dependence of Transcription Dominates Noise in Gene Expression

(2013) C. J. Zopf et al.   PLoS Computational Biology

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments

(2012) Andrew McDavid et al.   BIOINFORMATICS

Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase

(2012) Yosef Buganim et al.   CELL

Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells

(2012) Kenneth J. Livak et al.   METHODS

Single cell transcriptional profiling reveals heterogeneity of human induced pluripotent stem cells

(2011) Kazim H. Narsinh et al.   JOURNAL OF CLINICAL INVESTIGATION

Single-cell genomics

(2011) Tomer Kalisky et al.   NATURE METHODS

High-dimensional covariance estimation by minimizing ℓ1-penalized log-determinant divergence

(2011) Pradeep Ravikumar et al.   Electronic Journal of Statistics

A Mechanistic Model of PCR for Accurate Quantification of Quantitative PCR Data

(2010) Gregory J. Boggy et al.   PLoS One

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

(2009) Nicholas Paul Gauthier et al.   NUCLEIC ACIDS RESEARCH

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Automated gating of flow cytometry data via robust model-based clustering

(2008) Kenneth Lo et al.   CYTOMETRY PART A

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY