Searching for Collective Behavior in a Large Network of Sensory Neurons

Alert Response to Motion Onset in the Retina

(2013) E. Y. Chen et al.   JOURNAL OF NEUROSCIENCE

A method for closed-loop presentation of sensory stimuli conditional on the internal brain-state of awake animals

(2013) Ueli Rutishauser et al.   JOURNAL OF NEUROSCIENCE METHODS

Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses

(2013) Gašper Tkačik et al.   PHYSICAL REVIEW LETTERS

Statistical Thermodynamics of Natural Images

(2013) Greg J. Stephens et al.   PHYSICAL REVIEW LETTERS

Hierarchical model of natural images and the origin of scale invariance

(2013) S. Saremi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stimulus-dependent Maximum Entropy Models of Neural Population Codes

(2013) Einat Granot-Atedgi et al.   PLoS Computational Biology

High-order social interactions in groups of mice

(2013) Yair Shemesh et al.   eLife

Population Rate Dynamics and Multineuron Firing Patterns in Sensory Cortex

(2012) M. Okun et al.   JOURNAL OF NEUROSCIENCE

Mapping a Complete Neural Population in the Retina

(2012) O. Marre et al.   JOURNAL OF NEUROSCIENCE

The Brain Activity Map Project and the Challenge of Functional Connectomics

(2012) A. Paul Alivisatos et al.   NEURON

Statistical mechanics for natural flocks of birds

(2012) W. Bialek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomics-aided structure prediction

(2012) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Higher-Order Interactions Characterized in Cortical Activity

(2011) S. Yu et al.   JOURNAL OF NEUROSCIENCE

The Architecture of Functional Interaction Networks in the Retina

(2011) E. Ganmor et al.   JOURNAL OF NEUROSCIENCE

Gibbs distribution analysis of temporal correlations structure in retina ganglion cells

(2011) J.C. Vasquez et al.   JOURNAL OF PHYSIOLOGY-PARIS

Are Biological Systems Poised at Criticality?

(2011) Thierry Mora et al.   JOURNAL OF STATISTICAL PHYSICS

Common Input Explains Higher-Order Correlations and Entropy in a Simple Model of Neural Population Activity

(2011) Jakob H. Macke et al.   PHYSICAL REVIEW LETTERS

Adaptive Cluster Expansion for Inferring Boltzmann Machines with Noisy Data

(2011) S. Cocco et al.   PHYSICAL REVIEW LETTERS

Protein 3D Structure Computed from Evolutionary Sequence Variation

(2011) Debora S. Marks et al.   PLoS One

Sparse low-order interaction network underlies a highly correlated and learnable neural population code

(2011) E. Ganmor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hierarchical Interaction Structure of Neural Activities in Cortical Slice Cultures

(2010) G. S. Santos et al.   JOURNAL OF NEUROSCIENCE

Functional, But Not Anatomical, Separation of "What" and "When" in Prefrontal Cortex

(2010) C. K. Machens et al.   JOURNAL OF NEUROSCIENCE

Sparse coding and high-order correlations in fine-scale cortical networks

(2010) Ifije E. Ohiorhenuan et al.   NATURE

Cortical Preparatory Activity: Representation of Movement or First Cog in a Dynamical Machine?

(2010) Mark M. Churchland et al.   NEURON

Statistical mechanics of letters in words

(2010) Greg J. Stephens et al.   PHYSICAL REVIEW E

Local statistics in natural scenes predict the saliency of synthetic textures

(2010) G. Tkacik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimal population coding by noisy spiking neurons

(2010) G. Tkacik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maximum entropy models for antibody diversity

(2010) T. Mora et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein Sectors: Evolutionary Units of Three-Dimensional Structure

(2009) Najeeb Halabi et al.   CELL

The Structure of Large-Scale Synchronized Firing in Primate Retina

(2009) J. Shlens et al.   JOURNAL OF NEUROSCIENCE

Small-correlation expansions for the inverse Ising problem

(2009) Vitor Sessak et al.   Journal of Physics A-Mathematical and Theoretical

Ising model for neural data: Model quality and approximate methods for extracting functional connectivity

(2009) Yasser Roudi et al.   PHYSICAL REVIEW E

Prediction of Spatiotemporal Patterns of Neural Activity from Pairwise Correlations

(2009) O. Marre et al.   PHYSICAL REVIEW LETTERS

Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods

(2009) S. Cocco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical physics of pairwise probability models

(2009) Yasser Roudi   Frontiers in Computational Neuroscience

Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't

(2009) Yasser Roudi et al.   PLoS Computational Biology

A Small World of Neuronal Synchrony

(2008) Shan Yu et al.   CEREBRAL CORTEX

A Maximum Entropy Model Applied to Spatial and Temporal Correlations from Cortical Networks In Vitro

(2008) A. Tang et al.   JOURNAL OF NEUROSCIENCE

Spatio-temporal correlations and visual signalling in a complete neuronal population

(2008) Jonathan W. Pillow et al.   NATURE

Origin of correlated activity between parasol retinal ganglion cells

(2008) Philipp Khuc Trong et al.   NATURE NEUROSCIENCE

Searching for Memories, Sudoku, Implicit Check Bits, and the Iterative Use of Not-Always-Correct Rapid Neural Computation

(2008) J. J. Hopfield   NEURAL COMPUTATION

Functional Mechanisms Shaping Lateral Geniculate Responses to Artificial and Natural Stimuli

(2008) Valerio Mante et al.   NEURON

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

(2008) Flavio Seno et al.   PHYSICAL REVIEW LETTERS

Identification of direct residue contacts in protein-protein interaction by message passing

(2008) M. Weigt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA