A Peptide-Based Method for 13C Metabolic Flux Analysis in Microbial Communities

Predicting outcomes of steady-state 13C isotope tracing experiments using Monte Carlo sampling

(2012) Jan Schellenberger et al.   BMC Systems Biology

Progress toward single cell metabolomics

(2012) Stanislav S Rubakhin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities

(2012) Ali R. Zomorrodi et al.   PLoS Computational Biology

Subpopulation-Specific Metabolic Pathway Usage in Mixed Cultures as Revealed by Reporter Protein-Based13C Analysis

(2011) Martin Rühl et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic Flux Analysis and Visualization†

(2011) Yoshihiro Toya et al.   JOURNAL OF PROTEOME RESEARCH

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

(2011) Harry Yim et al.   Nature Chemical Biology

Modeling soil metabolic processes using isotopologue pairs of position-specific 13C-labeled glucose and pyruvate

(2011) Paul Dijkstra et al.   SOIL BIOLOGY & BIOCHEMISTRY

Research Advances and Challenges in the Microbiology of Enhanced Biological Phosphorus Removal—A Critical Review

(2011) Seyoum Yami Gebremariam et al.   WATER ENVIRONMENT RESEARCH

Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing

(2010) Fahimeh Salimi et al.   Biotechnology Journal

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

Metabolic Flux Analysis of the Mixotrophic Metabolisms in the Green Sulfur BacteriumChlorobaculum tepidum

(2010) Xueyang Feng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics

(2010) Danielle L. Swaney et al.   JOURNAL OF PROTEOME RESEARCH

UNiquant, a Program for Quantitative Proteomics Analysis Using Stable Isotope Labeling

(2010) Xin Huang et al.   JOURNAL OF PROTEOME RESEARCH

Improved computational performance of MFA using elementary metabolite units and flux coupling

(2009) Patrick F. Suthers et al.   METABOLIC ENGINEERING

Functional analysis of natural microbial consortia using community proteomics

(2009) Nathan C. VerBerkmoes et al.   NATURE REVIEWS MICROBIOLOGY

Isotopomer Distributions in Amino Acids from a Highly Expressed Protein as a Proxy for Those from Total Protein

(2008) Afshan S. Shaikh et al.   ANALYTICAL CHEMISTRY

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

(2008) Cong T. Trinh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Advances in analysis of microbial metabolic fluxes via13C isotopic labeling

(2008) Yinjie J. Tang et al.   MASS SPECTROMETRY REVIEWS

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

(2008) Jack A. Gilbert et al.   PLoS One

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE