Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes

Regulation of yeast central metabolism by enzyme phosphorylation

(2012) Ana Paula Oliveira et al.   Molecular Systems Biology

The importance of post-translational modifications in regulating Saccharomyces cerevisiae metabolism

(2011) Ana Paula Oliveira et al.   FEMS YEAST RESEARCH

Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics

(2011) R. Costenoble et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Extensive In Vivo Metabolite-Protein Interactions Revealed by Large-Scale Systematic Analyses

(2010) Xiyan Li et al.   CELL

Metabolism strikes back: metabolic flux regulates cell signaling

(2010) C. M. Metallo et al.   GENES & DEVELOPMENT

Metabolome, transcriptome and metabolic flux analysis of arabinose fermentation by engineered Saccharomyces cerevisiae

(2010) H. Wouter Wisselink et al.   METABOLIC ENGINEERING

Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity

(2010) Sarah-Maria Fendt et al.   Molecular Systems Biology

A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae

(2010) Oriol Gallego et al.   Molecular Systems Biology

Acetylation of Metabolic Enzymes Coordinates Carbon Source Utilization and Metabolic Flux

(2010) Q. Wang et al.   SCIENCE

Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes

(2010) Aleksej Zelezniak et al.   PLoS Computational Biology

Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator

(2009) Renata Usaite et al.   Molecular Systems Biology

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p

(2009) J. F. Moxley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae

(2009) Patrick H. Bradley et al.   PLoS Computational Biology

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

(2008) Ana Oliveira et al.   BMC Systems Biology

Characterization of Global Yeast Quantitative Proteome Data Generated from the Wild-Type and Glucose RepressionSaccharomyces cerevisiaeStrains: The Comparison of Two Quantitative Methods

(2008) Renata Usaite et al.   JOURNAL OF PROTEOME RESEARCH

Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: Quantification of metabolic impact

(2008) M.A.H. Luttik et al.   METABOLIC ENGINEERING

Physiological characterization of glucose repression in the strains with SNF1 and SNF4 genes deleted

(2007) R USAITE et al.   JOURNAL OF BIOTECHNOLOGY