A Multi-scale Analysis of Influenza A Virus Fitness Trade-offs due to Temperature-dependent Virus Persistence

AVIAN INFLUENZA SHEDDING PATTERNS IN WATERFOWL: IMPLICATIONS FOR SURVEILLANCE, ENVIRONMENTAL TRANSMISSION, AND DISEASE SPREAD

(2013) Viviane Hénaux et al.   JOURNAL OF WILDLIFE DISEASES

INTESTINAL EXCRETION OF A WILD BIRD-ORIGIN H3N8 LOW PATHOGENIC AVIAN INFLUENZA VIRUS IN MALLARDS (ANAS PLATYRHYNCHOS)

(2012) Justin D. Brown et al.   JOURNAL OF WILDLIFE DISEASES

Environmental and Demographic Determinants of Avian Influenza Viruses in Waterfowl across the Contiguous United States

(2012) Matthew L. Farnsworth et al.   PLoS One

Modelling the Wind-Borne Spread of Highly Pathogenic Avian Influenza Virus between Farms

(2012) Amos Ssematimba et al.   PLoS One

A Comprehensive Breath Plume Model for Disease Transmission via Expiratory Aerosols

(2012) Siobhan K. Halloran et al.   PLoS One

Linking Influenza Virus Tissue Tropism to Population-Level Reproductive Fitness

(2012) Leslie A. Reperant et al.   PLoS One

Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses

(2012) Kasia A. Pawelek et al.   PLoS Computational Biology

Causes of Variation in Malaria Infection Dynamics: Insights from Theory and Data

(2011) Nicole Mideo et al.   AMERICAN NATURALIST

A review of mathematical models of influenza A infections within a host or cell culture: lessons learned and challenges ahead

(2011) Catherine AA Beauchemin et al.   BMC PUBLIC HEALTH

BRIDGING SCALES IN THE EVOLUTION OF INFECTIOUS DISEASE LIFE HISTORIES: THEORY

(2011) Troy Day et al.   EVOLUTION

Viral Replication, Persistence in Water and Genetic Characterization of Two Influenza A Viruses Isolated from Surface Lake Water

(2011) Camille Lebarbenchon et al.   PLoS One

Body temperature responses of Pekin ducks (Anas platyrhynchos domesticus) exposed to different pathogens

(2011) M. Marais et al.   POULTRY SCIENCE

A Neutralizing Antibody Selected from Plasma Cells That Binds to Group 1 and Group 2 Influenza A Hemagglutinins

(2011) D. Corti et al.   SCIENCE

Influenza A virus infection kinetics: quantitative data and models

(2011) Amber M. Smith et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Avian Influenza Virus in Aquatic Habitats: What Do We Need to Learn?

(2010) David E. Stallknecht et al.   AVIAN DISEASES

Synthesizing within-host and population-level selective pressures on viral populations: the impact of adaptive immunity on viral immune escape

(2010) I. Volkov et al.   Journal of the Royal Society Interface

Phenotypic differences in viral immune escape explained by linking within-host dynamics to host-population immunity

(2010) K.M. Pepin et al.   JOURNAL OF THEORETICAL BIOLOGY

A general multi-strain model with environmental transmission: Invasion conditions for the disease-free and endemic states

(2010) Romulus Breban et al.   JOURNAL OF THEORETICAL BIOLOGY

Quantifying the Early Immune Response and Adaptive Immune Response Kinetics in Mice Infected with Influenza A Virus

(2010) H. Miao et al.   JOURNAL OF VIROLOGY

Dynamics of Influenza Virus Infection and Pathology

(2010) R. A. Saenz et al.   JOURNAL OF VIROLOGY

Methods of modelling viral disease dynamics across the within- and between-host scales: the impact of virus dose on host population immunity

(2010) S. H. Steinmeyer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Model-Based Evaluation of Highly and Low Pathogenic Avian Influenza Dynamics in Wild Birds

(2010) Viviane Hénaux et al.   PLoS One

Epidemiological and clinical consequences of within-host evolution

(2010) Samuel Alizon et al.   TRENDS IN MICROBIOLOGY

Informing Optimal Environmental Influenza Interventions: How the Host, Agent, and Environment Alter Dominant Routes of Transmission

(2010) Ian H. Spicknall et al.   PLoS Computational Biology

Dynamics and Control of Infections Transmitted From Person to Person Through the Environment

(2009) Sheng Li et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Evolution of Acute Infections and the Invasion‐Persistence Trade‐Off

(2009) Aaron A. King et al.   AMERICAN NATURALIST

Calculating the potential for within-flight transmission of influenza A (H1N1)

(2009) Bradley G Wagner et al.   BMC Medicine

Viral kinetics and exhaled droplet size affect indoor transmission dynamics of influenza infection

(2009) S. C. Chen et al.   INDOOR AIR

Water-borne transmission drives avian influenza dynamics in wild birds: The case of the 2005–2006 epidemics in the Camargue area

(2009) Benjamin Roche et al.   INFECTION GENETICS AND EVOLUTION

An accurate two-phase approximate solution to an acute viral infection model

(2009) Amber M. Smith et al.   JOURNAL OF MATHEMATICAL BIOLOGY

The effect of environmental parameters on the survival of airborne infectious agents

(2009) J. W. Tang   Journal of the Royal Society Interface

Towards a quantitative understanding of the within-host dynamics of influenza A infections

(2009) A. Handel et al.   Journal of the Royal Society Interface

Simulation and Prediction of the Adaptive Immune Response to Influenza A Virus Infection

(2009) H. Y. Lee et al.   JOURNAL OF VIROLOGY

The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis

(2009) F. Luciani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental transmission of low pathogenicity avian influenza viruses and its implications for pathogen invasion

(2009) P. Rohani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relative Contributions of Four Exposure Pathways to Influenza Infection Risk

(2009) Mark Nicas et al.   RISK ANALYSIS

Antigenic Diversity, Transmission Mechanisms, and the Evolution of Pathogens

(2009) Alexander Lange et al.   PLoS Computational Biology

The Role of Environmental Transmission in Recurrent Avian Influenza Epidemics

(2009) Romulus Breban et al.   PLoS Computational Biology

Avian Influenza Virus Glycoproteins Restrict Virus Replication and Spread through Human Airway Epithelium at Temperatures of the Proximal Airways

(2009) Margaret A. Scull et al.   PLoS Pathogens

The Pathology of Influenza Virus Infections

(2008) Jeffery K. Taubenberger et al.   Annual Review of Pathology-Mechanisms of Disease

Quantifying the Routes of Transmission for Pandemic Influenza

(2008) Michael P. Atkinson et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Dynamics of Indirectly Transmitted Infectious Diseases with Immunological Threshold

(2008) Richard I. Joh et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Surviving the Bottleneck: Transmission Mutants and the Evolution of Microbial Populations

(2008) A. Handel et al.   GENETICS

Inactivation of influenza A viruses in the environment and modes of transmission: A critical review

(2008) Thomas P. Weber et al.   JOURNAL OF INFECTION

HIV-1 Transmission, by Stage of Infection

(2008) T. Déirdre Hollingsworth et al.   JOURNAL OF INFECTIOUS DISEASES

Heterosubtypic Neutralizing Monoclonal Antibodies Cross-Protective against H5N1 and H1N1 Recovered from Human IgM+ Memory B Cells

(2008) Mark Throsby et al.   PLoS One

Structure of influenza hemagglutinin in complex with an inhibitor of membrane fusion

(2008) R. J. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A quantitative test of the relationship between parasite dose and infection probability across different host-parasite combinations

(2008) F. Ben-Ami et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases

(2008) N MIDEO et al.   TRENDS IN ECOLOGY & EVOLUTION

Avian influenza virus in water: Infectivity is dependent on pH, salinity and temperature

(2008) Justin D. Brown et al.   VETERINARY MICROBIOLOGY

Free-living pathogens: Life-history constraints and strain competition

(2007) Thomas Caraco et al.   JOURNAL OF THEORETICAL BIOLOGY