Full Design Automation of Multi-State RNA Devices to Program Gene Expression Using Energy-Based Optimization

Perspectives on the automatic design of regulatory systems for synthetic biology

(2012) Guillermo Rodrigo et al.   FEBS LETTERS

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

(2012) Katarzyna J. Bandyra et al.   MOLECULAR CELL

Rationally designed families of orthogonal RNA regulators of translation

(2012) Vivek K Mutalik et al.   Nature Chemical Biology

Engineering naturally occurring trans -acting non-coding RNAs to sense molecular signals

(2012) Lei Qi et al.   NUCLEIC ACIDS RESEARCH

De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells

(2012) G. Rodrigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic switchboard for synthetic biology applications

(2012) J. M. Callura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Versatile RNA-sensing transcriptional regulators for engineering genetic networks

(2011) J. B. Lucks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-Driven Engineering of RNA Devices to Quantitatively Program Gene Expression

(2011) J. M. Carothers et al.   SCIENCE

Atomic accuracy in predicting and designing noncanonical RNA structure

(2010) Rhiju Das et al.   NATURE METHODS

RNA-mediated regulation in bacteria: from natural to artificial systems

(2010) Efthimia Lioliou et al.   New Biotechnology

A partition function algorithm for interacting nucleic acid strands

(2009) Hamidreza Chitsaz et al.   BIOINFORMATICS

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Molecular implementation of simple logic programs

(2009) Tom Ran et al.   Nature Nanotechnology

Conditional gene silencing of multiple genes with antisense RNAs and generation of a mutator strain of Escherichia coli

(2009) Nobutaka Nakashima et al.   NUCLEIC ACIDS RESEARCH

Synthetic Gene Networks That Count

(2009) A. E. Friedland et al.   SCIENCE

Model-guided design of ligand-regulated RNAi for programmable control of gene expression

(2008) Chase L Beisel et al.   Molecular Systems Biology

Programming biomolecular self-assembly pathways

(2008) Peng Yin et al.   NATURE