Interface-Resolved Network of Protein-Protein Interactions

SAPIN: A framework for the structural analysis of protein interaction networks

(2012) Jae-Seong Yang et al.   BIOINFORMATICS

Plasma Membrane Reshaping during Endocytosis Is Revealed by Time-Resolved Electron Tomography

(2012) Wanda Kukulski et al.   CELL

Novel insights through the integration of structural and functional genomics data with protein networks

(2012) Declan Clarke et al.   JOURNAL OF STRUCTURAL BIOLOGY

Three-dimensional reconstruction of protein networks provides insight into human genetic disease

(2012) Xiujuan Wang et al.   NATURE BIOTECHNOLOGY

Computational structural analysis of protein interactions and networks

(2012) Yogesh Hooda et al.   PROTEOMICS

Getting in Touch with the Clathrin Terminal Domain

(2012) Sandra K. Lemmon et al.   TRAFFIC

Three-dimensional modeling of protein interactions and complexes is going ‘omics

(2011) Amelie Stein et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structural and functional protein network analyses predict novel signaling functions for rhodopsin

(2011) C. Kiel et al.   Molecular Systems Biology

Actin dynamics counteract membrane tension during clathrin-mediated endocytosis

(2011) Steeve Boulant et al.   NATURE CELL BIOLOGY

Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM

(2011) Nurcan Tuncbag et al.   Nature Protocols

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins

(2011) B. A. Shoemaker et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Structural conservation of druggable hot spots in protein-protein interfaces

(2011) D. Kozakov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

(2011) M. Heo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determinants of endocytic membrane geometry, stability, and scission

(2011) T. Kishimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and biochemical characterization of two binding sites for nucleation-promoting factor WASp-VCA on Arp2/3 complex

(2011) S.-C. Ti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Yeast Dynamin Vps1 and Amphiphysin Rvs167 Function Together During Endocytosis

(2011) Iwona I. Smaczynska-de Rooij et al.   TRAFFIC

Clathrin-mediated endocytosis in budding yeast

(2011) Jasper Weinberg et al.   TRENDS IN CELL BIOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Regulation of clathrin adaptor function in endocytosis: novel role for the SAM domain

(2010) Santiago M Di Pietro et al.   EMBO JOURNAL

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks

(2010) M. E. Johnson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Global Protein Kinase and Phosphatase Interaction Network in Yeast

(2010) A. Breitkreutz et al.   SCIENCE

Towards inferring time dimensionality in protein–protein interaction networks by integrating structures: the p53 example

(2009) Nurcan Tuncbag et al.   Molecular BioSystems

Coronin Switches Roles in Actin Disassembly Depending on the Nucleotide State of Actin

(2009) Meghal Gandhi et al.   MOLECULAR CELL

Power-Law Distributions in Empirical Data

(2009) Aaron Clauset et al.   SIAM REVIEW

Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins

(2009) Raffi Tonikian et al.   PLOS BIOLOGY

Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments

(2009) Roberto Mosca et al.   PLoS Computational Biology

Analyzing Protein Interaction Networks Using Structural Information

(2008) Christina Kiel et al.   Annual Review of Biochemistry

Conservation and topology of protein interaction networks under duplication-divergence evolution

(2008) K. Evlampiev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

An in Vivo Map of the Yeast Protein Interactome

(2008) K. Tarassov et al.   SCIENCE