GINI: From ISH Images to Gene Interaction Networks

Learning Sparse Representations for Fruit-Fly Gene Expression Pattern Image Annotation and Retrieval

(2012) Lei Yuan et al.   BMC BIOINFORMATICS

Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi

(2011) Ralph A. Neumüller et al.   Cell Stem Cell

High-dimensional covariance estimation by minimizing ℓ1-penalized log-determinant divergence

(2011) Pradeep Ravikumar et al.   Electronic Journal of Statistics

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images

(2010) Kriti Puniyani et al.   BIOINFORMATICS

Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex

(2010) A. Missra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images

(2009) Daniel L. Mace et al.   BIOINFORMATICS

The transcriptional network for mesenchymal transformation of brain tumours

(2009) Maria Stella Carro et al.   NATURE

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells

(2009) Kai Wang et al.   NATURE BIOTECHNOLOGY

Recovering time-varying networks of dependencies in social and biological studies

(2009) A. Ahmed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting expression patterns from regulatory sequence in Drosophila segmentation

(2008) Eran Segal et al.   NATURE