A Network Approach to Analyzing Highly Recombinant Malaria Parasite Genes

Gene similarity networks provide tools for understanding eukaryote origins and evolution

(2013) D. Alvarez-Ponce et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitotic Evolution of Plasmodium falciparum Shows a Stable Core Genome but Recombination in Antigen Families

(2013) Selina E. R. Bopp et al.   PLoS Genetics

Targets of antibodies against Plasmodium falciparum–infected erythrocytes in malaria immunity

(2012) Jo-Anne Chan et al.   JOURNAL OF CLINICAL INVESTIGATION

Evolutionary analyses of non-genealogical bonds produced by introgressive descent

(2012) E. Bapteste et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prognostic Indicators of Life-Threatening Malaria Are Associated with Distinct Parasite Variant Antigen Profiles

(2012) G. M. Warimwe et al.   Science Translational Medicine

Evolution of the Multi-Domain Structures of Virulence Genes in the Human Malaria Parasite, Plasmodium falciparum

(2012) Caroline O. Buckee et al.   PLoS Computational Biology

Stochastic blockmodels and community structure in networks

(2011) Brian Karrer et al.   PHYSICAL REVIEW E

Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution

(2010) Leonard Apeltsin et al.   BIOINFORMATICS

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks

(2010) Marco Fondi et al.   ENVIRONMENTAL MICROBIOLOGY

A Survey of Combinatorial Methods for Phylogenetic Networks

(2010) Daniel H. Huson et al.   Genome Biology and Evolution

Community Structure in Time-Dependent, Multiscale, and Multiplex Networks

(2010) P. J. Mucha et al.   SCIENCE

Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes – Divide and Conquer

(2010) Thomas S. Rask et al.   PLoS Computational Biology

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

(2009) Holly J. Atkinson et al.   PLoS One

Plasmodium falciparum var gene expression is modified by host immunity

(2009) G. M. Warimwe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network analyses structure genetic diversity in independent genetic worlds

(2009) S. Halary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Frequent recombination events generate diversity within the multi-copy variant antigen gene families of Plasmodium falciparum

(2008) Matthias Frank et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Plasmodium falciparumantigenic variation. Mapping mosaicvargene sequences onto a network of shared, highly polymorphic sequence blocks

(2008) Peter C. Bull et al.   MOLECULAR MICROBIOLOGY

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA