Folding Pathways of a Knotted Protein with a Realistic Atomistic Force Field

Dominant folding pathways of a WW domain

(2012) S. a Beccara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Energy landscape of knotted protein folding

(2012) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing the Entanglement and Locating Knots in Ring Polymers: A Comparative Study of Different Arc Closure Schemes

(2012) Luca Tubiana et al.   PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT

The Role of Non-Native Interactions in the Folding of Knotted Proteins

(2012) Tatjana Škrbić et al.   PLoS Computational Biology

Fluctuations in the ensemble of reaction pathways

(2011) G. Mazzola et al.   JOURNAL OF CHEMICAL PHYSICS

Hierarchy of folding and unfolding events of protein G, CI2, and ACBP from explicit-solvent simulations

(2011) Carlo Camilloni et al.   JOURNAL OF CHEMICAL PHYSICS

The Free Energy Landscape Analysis of Protein (FIP35) Folding Dynamics

(2011) Sergei V. Krivov   JOURNAL OF PHYSICAL CHEMISTRY B

Knot formation in newly translated proteins is spontaneous and accelerated by chaperonins

(2011) Anna L Mallam et al.   Nature Chemical Biology

Multiscale Entanglement in Ring Polymers under Spherical Confinement

(2011) Luca Tubiana et al.   PHYSICAL REVIEW LETTERS

Structures and folding pathways of topologically knotted proteins

(2010) Peter Virnau et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Slipknotting upon native-like loop formation in a trefoil knot protein

(2010) J. K. Noel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and folding of a designed knotted protein

(2010) N. P. King et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Atomic-Level Characterization of the Structural Dynamics of Proteins

(2010) D. E. Shaw et al.   SCIENCE

Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops

(2010) Raffaello Potestio et al.   PLoS Computational Biology

A Stevedore's Protein Knot

(2010) Daniel Bölinger et al.   PLoS Computational Biology

Dominant reaction pathways in high-dimensional systems

(2009) E. Autieri et al.   JOURNAL OF CHEMICAL PHYSICS

Coordinate-dependent diffusion in protein folding

(2009) R. B. Best et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dodging the crisis of folding proteins with knots

(2009) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How does a knotted protein fold?

(2008) Anna L. Mallam   FEBS Journal

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Coarse-grained Models for Simulations of Multiprotein Complexes: Application to Ubiquitin Binding

(2007) Young C. Kim et al.   JOURNAL OF MOLECULAR BIOLOGY