A Two-State Model for the Dynamics of the Pyrophosphate Ion Release in Bacterial RNA Polymerase
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A Two-State Model for the Dynamics of the Pyrophosphate Ion Release in Bacterial RNA Polymerase
Authors
Keywords
-
Journal
PLoS Computational Biology
Volume 9, Issue 4, Pages e1003020
Publisher
Public Library of Science (PLoS)
Online
2013-04-05
DOI
10.1371/journal.pcbi.1003020
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Basic mechanism of transcription by RNA polymerase II
- (2012) Vladimir Svetlov et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae
- (2012) Craig D. Kaplan Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- A Movie of RNA Polymerase II Transcription
- (2012) Alan C.M. Cheung et al. CELL
- Active site opening and closure control translocation of multisubunit RNA polymerase
- (2012) Anssi M. Malinen et al. NUCLEIC ACIDS RESEARCH
- Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II
- (2012) M. H. Larson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase
- (2012) Maria L Kireeva et al. BMC Biophysics
- Dissection of Pol II Trigger Loop Function and Pol II Activity–Dependent Control of Start Site Selection In Vivo
- (2012) Craig D. Kaplan et al. PLoS Genetics
- RNA Transcript 3′-Proximal Sequence Affects Translocation Bias of RNA Polymerase
- (2011) Pyae P. Hein et al. BIOCHEMISTRY
- Fast transcription rates of RNA polymerase II in human cells
- (2011) Paolo Maiuri et al. EMBO REPORTS
- The Catalytic Mechanism of RNA Polymerase II
- (2011) Alexandra T. P. Carvalho et al. Journal of Chemical Theory and Computation
- Simulating the T-Jump-Triggered Unfolding Dynamics of trpzip2 Peptide and Its Time-Resolved IR and Two-Dimensional IR Signals Using the Markov State Model Approach
- (2011) Wei Zhuang et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Dynamics of Pyrophosphate Ion Release and Its Coupled Trigger Loop Motion from Closed to Open State in RNA Polymerase II
- (2011) Lin-Tai Da et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein
- (2011) Daniel-Adriano Silva et al. PLoS Computational Biology
- Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
- (2010) Steve A. Seibold et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- RNA Polymerase II with Open and Closed Trigger Loops: Active Site Dynamics and Nucleic Acid Translocation
- (2010) Michael Feig et al. BIOPHYSICAL JOURNAL
- Taming the complexity of protein folding
- (2010) Gregory R Bowman et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
- (2010) Shunsuke Tagami et al. NATURE
- RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription
- (2010) X. Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis
- (2010) Y. Yuzenkova et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Macromolecular micromovements: how RNA polymerase translocates
- (2009) Vladimir Svetlov et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- A movie of the RNA polymerase nucleotide addition cycle
- (2009) Florian Brueckner et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- RNA polymerase fidelity and transcriptional proofreading
- (2009) Jasmin F Sydow et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Progress and challenges in the automated construction of Markov state models for full protein systems
- (2009) Gregory R. Bowman et al. JOURNAL OF CHEMICAL PHYSICS
- Using generalized ensemble simulations and Markov state models to identify conformational states
- (2009) Gregory R. Bowman et al. METHODS
- Defining mechanisms that regulate RNA polymerase II transcription in vivo
- (2009) Nicholas J. Fuda et al. NATURE
- Role of the RNA polymerase trigger loop in catalysis and pausing
- (2009) Jinwei Zhang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Nucleic acid polymerases use a general acid for nucleotidyl transfer
- (2009) Christian Castro et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transcriptional pausing without backtracking
- (2009) R. Landick PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid equilibrium sampling initiated from nonequilibrium data
- (2009) X. Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA polymerase II flexibility during translocation from normal mode analysis
- (2009) Michael Feig et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Transition networks for modeling the kinetics of conformational change in macromolecules
- (2008) Frank Noé et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The RNA Polymerase II Trigger Loop Functions in Substrate Selection and Is Directly Targeted by α-Amanitin
- (2008) Craig D. Kaplan et al. MOLECULAR CELL
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now