Dynamic Prestress in a Globular Protein

Implementation of force distribution analysis for molecular dynamics simulations

(2011) Wolfram Stacklies et al.   BMC BIOINFORMATICS

Compaction and Tensile Forces Determine the Accuracy of Folding Landscape Parameters from Single Molecule Pulling Experiments

(2011) Greg Morrison et al.   PHYSICAL REVIEW LETTERS

Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins

(2011) Wenfei Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the role of frustration in the energy landscapes of allosteric proteins

(2011) Diego U. Ferreiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

“Fluctuograms” Reveal the Intermittent Intra-Protein Communication in Subtilisin Carlsberg and Correlate Mechanical Coupling with Co-Evolution

(2011) Jordi Silvestre-Ryan et al.   PLoS Computational Biology

Mechano-chemistry of the enzyme Guanylate Kinase

(2010) C.-Y. Tseng et al.   EPL

Self-assembly of three-dimensional prestressed tensegrity structures from DNA

(2010) Tim Liedl et al.   Nature Nanotechnology

Water's role in the force-induced unfolding of ubiquitin

(2010) J. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy

(2010) T.-L. Kuo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anomalous Strength Characteristics of Tilt Grain Boundaries in Graphene

(2010) R. Grantab et al.   SCIENCE

DNA nanomechanics: How proteins deform the double helix

(2009) Nils B. Becker et al.   JOURNAL OF CHEMICAL PHYSICS

Effective force coarse-graining

(2009) Yanting Wang et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Mechanical Network in Titin Immunoglobulin from Force Distribution Analysis

(2009) Wolfram Stacklies et al.   PLoS Computational Biology

‘Mechanical Engineering’ of Elastomeric Proteins: Toward Designing New Protein Building Blocks for Biomaterials

(2008) Hongbin Li   ADVANCED FUNCTIONAL MATERIALS

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Protein Side-Chain Dynamics and Residual Conformational Entropy

(2008) Nikola Trbovic et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY