Chapter 2: Data-Driven View of Disease Biology

Accurate evaluation and analysis of functional genomics data and methods

(2012) Casey S. Greene et al.   Annals of the New York Academy of Sciences

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

PAIR: the predicted Arabidopsis interactome resource

(2010) Mingzhi Lin et al.   NUCLEIC ACIDS RESEARCH

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Systematic Planning of Genome-Scale Experiments in Poorly Studied Species

(2010) Yuanfang Guan et al.   PLoS Computational Biology

Exploring the human genome with functional maps

(2009) C. Huttenhower et al.   GENOME RESEARCH

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis

(2009) Matthew A. Hibbs et al.   PLoS Computational Biology

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis

(2009) David C. Hess et al.   PLoS Genetics

RNA interference screen for human genes associated with West Nile virus infection

(2008) Manoj N. Krishnan et al.   NATURE

Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy

(2008) Wan Kim et al.   GENOME BIOLOGY

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

(2008) Sara Mostafavi et al.   GENOME BIOLOGY