A Computational Investigation on the Connection between Dynamics Properties of Ribosomal Proteins and Ribosome Assembly

MAVENs: Motion analysis and visualization of elastic networks and structural ensembles

(2011) Michael T Zimmermann et al.   BMC BIOINFORMATICS

Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome

(2011) A. J. Adamczyk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Combined Molecular Dynamics and Rapid Kinetics Approach to Identify Conserved Three-Dimensional Communication Networks in Elongation Factor Tu

(2010) Hans-Joachim Wieden et al.   BIOPHYSICAL JOURNAL

The Role of L1 Stalk–tRNA Interaction in the Ribosome Elongation Cycle

(2010) Leonardo G. Trabuco et al.   JOURNAL OF MOLECULAR BIOLOGY

Connecting Energy Landscapes with Experimental Rates for Aminoacyl-tRNA Accommodation in the Ribosome

(2010) Paul C. Whitford et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways

(2010) P. C. Whitford et al.   RNA

Recognition of the Regulatory Nascent Chain TnaC by the Ribosome

(2010) Leonardo G. Trabuco et al.   STRUCTURE

Regulation of the Protein-Conducting Channel by a Bound Ribosome

(2009) James Gumbart et al.   STRUCTURE

Effects of Protein Subunits Removal on the Computed Motions of Partial 30S Structures of the Ribosome

(2008) Aimin Yan et al.   Journal of Chemical Theory and Computation

Stochastic Gating and Drug–Ribosome Interactions

(2008) Andrea C. Vaiana et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular Dynamics Study of the Ribosomal A-Site

(2008) Julia Romanowska et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

(2008) Tadepalli Adilakshmi et al.   NATURE

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling

(2008) Ozge Kurkcuoglu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assembly of the 5′ and 3′ Minor Domains of 16S Ribosomal RNA as Monitored by Tethered Probing from Ribosomal Protein S20

(2007) Laura M. Dutca et al.   JOURNAL OF MOLECULAR BIOLOGY