Measuring the Evolutionary Rewiring of Biological Networks

Correction: Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species

(2014) Pedro Beltrao et al.   PLOS BIOLOGY

MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains

(2010) Hugo YK Lam et al.   BMC BIOINFORMATICS

Ordered structure of the transcription network inherited from the yeast whole-genome duplication

(2010) Diana Fusco et al.   BMC Systems Biology

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species

(2010) D. Xie et al.   GENOME RESEARCH

Transposable elements have rewired the core regulatory network of human embryonic stem cells

(2010) Galih Kunarso et al.   NATURE GENETICS

Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks

(2010) K.-K. Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding

(2010) D. Schmidt et al.   SCIENCE

Evolutionary Tinkering with Conserved Components of a Transcriptional Regulatory Network

(2010) Hugo Lavoie et al.   PLOS BIOLOGY

A c-Myc regulatory subnetwork from human transposable element sequences

(2009) Jianrong Wang et al.   Molecular BioSystems

Database resources of the National Center for Biotechnology Information

(2009) Eric W. Sayers et al.   NUCLEIC ACIDS RESEARCH

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

Posttranslational regulation impacts the fate of duplicated genes

(2009) G. D. Amoutzias et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast

(2009) G. C. Conant   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of the mammalian transcription factor binding repertoire via transposable elements

(2008) G. Bourque et al.   GENOME RESEARCH

The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication

(2008) A. Presser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes

(2008) S. J. Dixon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast

(2008) A. Roguev et al.   SCIENCE

Protein Complex Evolution Does Not Involve Extensive Network Rewiring

(2008) Teunis J. P. van Dam et al.   PLoS Computational Biology