Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases

Generalized random set framework for functional enrichment analysis using primary genomics datasets

(2010) Johannes M. Freudenberg et al.   BIOINFORMATICS

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Prior biological knowledge-based approaches for the analysis of genome-wide expression profiles using gene sets and pathways

(2010) Michael C Wu et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Making Informed Choices about Microarray Data Analysis

(2010) Mark Reimers   PLoS Computational Biology

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Are a set of microarrays independent of each other?

(2009) Bradley Efron   Annals of Applied Statistics

Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets

(2009) Galina V. Glazko et al.   BIOINFORMATICS

Gene ranking and biomarker discovery under correlation

(2009) V. Zuber et al.   BIOINFORMATICS

A general modular framework for gene set enrichment analysis

(2009) Marit Ackermann et al.   BMC BIOINFORMATICS

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Comparative study of gene set enrichment methods

(2009) Luca Abatangelo et al.   BMC BIOINFORMATICS

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Gene-set approach for expression pattern analysis

(2008) D. Nam et al.   BRIEFINGS IN BIOINFORMATICS

Gene-set analysis and reduction

(2008) I. Dinu et al.   BRIEFINGS IN BIOINFORMATICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH