ESRRA-C11orf20 Is a Recurrent Gene Fusion in Serous Ovarian Carcinoma

Inherited Variants in Mitochondrial Biogenesis Genes May Influence Epithelial Ovarian Cancer Risk

(2011) J. Permuth-Wey et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

Statistical Modeling of RNA-Seq Data

(2011) Julia Salzman et al.   STATISTICAL SCIENCE

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

(2011) Andrew McPherson et al.   PLoS Computational Biology

Orphan nuclear receptors in breast cancer pathogenesis and therapeutic response

(2010) Rebecca B Riggins et al.   ENDOCRINE-RELATED CANCER

De novo rates and selection of large copy number variation

(2010) A. Itsara et al.   GENOME RESEARCH

Integrative analysis of the melanoma transcriptome

(2010) M. F. Berger et al.   GENOME RESEARCH

Screening of genes involved in chromosome segregation during meiosis I: toward the identification of genes responsible for infertility in humans

(2010) Hiroshi Kogo et al.   JOURNAL OF HUMAN GENETICS

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

(2010) Andrea Sboner et al.   GENOME BIOLOGY

Towards a comprehensive structural variation map of an individual human genome

(2010) Andy W Pang et al.   GENOME BIOLOGY

Estrogen-related receptor alpha induces the expression of vascular endothelial growth factor in breast cancer cells

(2009) Rebecca A. Stein et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

Transcriptome sequencing to detect gene fusions in cancer

(2009) Christopher A. Maher et al.   NATURE

Complex landscapes of somatic rearrangement in human breast cancer genomes

(2009) Philip J. Stephens et al.   NATURE

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing

(2009) Emily Hodges et al.   Nature Protocols

Kaempferol Inhibits Angiogenesis and VEGF Expression Through Both HIF Dependent and Independent Pathways in Human Ovarian Cancer Cells

(2009) Haitao Luo et al.   NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

(2009) Daniel R. Zerbino et al.   PLoS One

Chimeric transcript discovery by paired-end transcriptome sequencing

(2009) C. A. Maher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Repair-Mediated Duplication by Capture of Proximal Chromosomal DNA Has Shaped Vertebrate Genome Evolution

(2009) John K. Pace et al.   PLoS Genetics

The Preclinical Natural History of Serous Ovarian Cancer: Defining the Target for Early Detection

(2009) Patrick O. Brown et al.   PLOS MEDICINE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Estrogen-Related Receptor α Is Critical for the Growth of Estrogen Receptor–Negative Breast Cancer

(2008) Rebecca A. Stein et al.   CANCER RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

A large genome center's improvements to the Illumina sequencing system

(2008) Michael A Quail et al.   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS