Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles

Genome Evolution in Reptilia, the Sister Group of Mammals

(2010) Daniel E. Janes et al.   Annual Review of Genomics and Human Genetics

MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics

(2010) Raphaël Helaers et al.   BMC BIOINFORMATICS

Human functional genetic studies are biased against the medically most relevant primate-specific genes

(2010) Lili Hao et al.   BMC EVOLUTIONARY BIOLOGY

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

(2010) Tonia S Schwartz et al.   BMC GENOMICS

Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate

(2010) Wiesław Babik et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

Transcriptomic analysis of the venom gland of the red-headed krait (Bungarus flaviceps) using expressed sequence tags

(2010) Ang Siang et al.   BMC MOLECULAR BIOLOGY

Variability in Sex-Determining Mechanisms Influences Genome Complexity in Reptilia

(2010) D.E. Janes et al.   CYTOGENETIC AND GENOME RESEARCH

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

(2010) V. M. Bruno et al.   GENOME RESEARCH

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Subdivisions of the turtle Pseudemys scripta subpallium based on the expression of regulatory genes and neuronal markers

(2010) Nerea Moreno et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Changes in Hox genes’ structure and function during the evolution of the squamate body plan

(2010) Nicolas Di-Poï et al.   NATURE

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples

(2010) A. M. Smith et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Whole transcriptome analysis of the fasting and fed Burmese python heart: insights into extreme physiological cardiac adaptation

(2010) Christopher E. Wall et al.   PHYSIOLOGICAL GENOMICS

Incidence, causes and consequences of pregnancy failure in viviparous lizards: implications for research and conservation settings

(2010) Kelly M. Hare et al.   REPRODUCTION FERTILITY AND DEVELOPMENT

The Tasmanian Devil Transcriptome Reveals Schwann Cell Origins of a Clonally Transmissible Cancer

(2010) E. P. Murchison et al.   SCIENCE

2× genomes - depth does matter

(2010) Michel C Milinkovitch et al.   GENOME BIOLOGY

Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing

(2010) Anna Wetterbom et al.   GENOME BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Acoustic communication in crocodilians: from behaviour to brain

(2009) A. L. Vergne et al.   BIOLOGICAL REVIEWS

Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing

(2009) Wei Wang et al.   BMC GENOMICS

Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird

(2009) Charles Chapus et al.   BMC GENOMICS

Comparative venom gland transcriptome surveys of the saw-scaled vipers (Viperidae: Echis) reveal substantial intra-family gene diversity and novel venom transcripts

(2009) Nicholas R Casewell et al.   BMC GENOMICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Development of cardiac form and function in ectothermic sauropsids

(2009) Dane A. Crossley et al.   JOURNAL OF MORPHOLOGY

Molecular and functional basis of phenotypic convergence in white lizards at White Sands

(2009) E. B. Rosenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Communal Egg-laying In Reptiles And Amphibians: Evolutionary Patterns And Hypotheses

(2009) J. Sean Doody et al.   QUARTERLY REVIEW OF BIOLOGY

Development and evolution of the subpallium

(2009) Nerea Moreno et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

(2009) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Transcriptome analysis of the Amazonian viper Bothrops atrox venom gland using expressed sequence tags (ESTs)

(2009) Márcia Neiva et al.   TOXICON

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Turtle isochore structure is intermediate between amphibians and other amniotes

(2008) J. L. Chojnowski et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

MassNet: a functional annotation service for protein mass spectrometry data

(2008) D. Park et al.   NUCLEIC ACIDS RESEARCH

On the nature of human housekeeping genes

(2008) Jiang Zhu et al.   TRENDS IN GENETICS