Contribution of Transcriptomics to Systems-Level Understanding of MethanogenicArchaea

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing

(2012) Roland Wirth et al.   Biotechnology for Biofuels

Functional responses of methanogenic archaea to syntrophic growth

(2012) Christopher B Walker et al.   ISME Journal

An archaeal sRNA targeting cis - and trans -encoded mRNAs via two distinct domains

(2012) Dominik Jäger et al.   NUCLEIC ACIDS RESEARCH

Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass

(2011) James G Ferry   CURRENT OPINION IN BIOTECHNOLOGY

Defining the response of a microorganism to temperatures that span its complete growth temperature range (−2°C to 28°C) using multiplex quantitative proteomics

(2011) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Re-evaluation of the function of the F420 dehydrogenase in electron transport of Methanosarcina mazei

(2011) Cornelia Welte et al.   FEBS Journal

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

(2011) Marc Güell et al.   NATURE REVIEWS MICROBIOLOGY

Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA

(2011) Tao Huang et al.   PLoS One

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

(2011) E. E. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Establishing a Markerless Genetic Exchange System forMethanosarcina mazeiStrain Gö1 for Constructing Chromosomal Mutants of Small RNA Genes

(2011) Claudia Ehlers et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A

(2010) Lars Rohlin et al.   BMC MICROBIOLOGY

Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii

(2010) S. Campanaro et al.   ENVIRONMENTAL MICROBIOLOGY

Links between methane flux and transcriptional activities of methanogens and methane oxidizers in a blanket peat bog

(2010) Thomas E. Freitag et al.   FEMS MICROBIOLOGY ECOLOGY

Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog

(2010) S. L. Brauer et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Growth- and substrate-dependent transcription of formate dehydrogenase and hydrogenase coding genes in Syntrophobacter fumaroxidans and Methanospirillum hungatei

(2010) P. Worm et al.   MICROBIOLOGY-SGM

Linear covariance models to examine the determinants of protein levels in Lactococcus lactis

(2010) Clémentine Dressaire et al.   Molecular BioSystems

Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductase

(2010) K. C. Costa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlation of Methane Production and Functional Gene Transcriptional Activity in a Peat Soil

(2009) T. E. Freitag et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis

(2009) Qiangwei Xia et al.   BMC MICROBIOLOGY

A single-base resolution map of an archaeal transcriptome

(2009) O. Wurtzel et al.   GENOME RESEARCH

Transcriptional Profiling of Methyltransferase Genes during Growth of Methanosarcina mazei on Trimethylamine

(2009) C. Kratzer et al.   JOURNAL OF BACTERIOLOGY

A 5' Leader Sequence Regulates Expression of Methanosarcinal CO Dehydrogenase/Acetyl Coenzyme A Synthase

(2009) K. L. Anderson et al.   JOURNAL OF BACTERIOLOGY

Physiology and Posttranscriptional Regulation of Methanol:Coenzyme M Methyltransferase Isozymes in Methanosarcina acetivorans C2A

(2009) R. B. Opulencia et al.   JOURNAL OF BACTERIOLOGY

Function of Ech Hydrogenase in Ferredoxin-Dependent, Membrane-Bound Electron Transport in Methanosarcina mazei

(2009) C. Welte et al.   JOURNAL OF BACTERIOLOGY

Distinct regulators control the expression of methanol methyltransferase isozymes inMethanosarcina acetivoransC2A

(2009) Arpita Bose et al.   MOLECULAR MICROBIOLOGY

Overlapping repressor binding sites regulate expression of theMethanococcus maripaludis glnK1operon

(2009) Thomas J. Lie et al.   MOLECULAR MICROBIOLOGY

Methanogenesis byMethanosarcina acetivoransinvolves two structurally and functionally distinct classes of heterodisulfide reductase

(2009) Nicole R. Buan et al.   MOLECULAR MICROBIOLOGY

Regulation of Translation in Haloarchaea: 5′- and 3′-UTRs Are Essential and Have to Functionally Interact In Vivo

(2009) Mariam Brenneis et al.   PLoS One

Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa

(2009) E. Sonnleitner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability

(2009) D. Jager et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flagellum Mediates Symbiosis

(2009) T. Shimoyama et al.   SCIENCE

Methanogenesis in Marine Sediments

(2008) James G. Ferry et al.   Annals of the New York Academy of Sciences

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Characterization of the Archaeal Community in a Minerotrophic Fen and Terminal Restriction Fragment Length Polymorphism-Directed Isolation of a Novel Hydrogenotrophic Methanogen

(2008) H. Cadillo-Quiroz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Next-generation sequencing: applications beyond genomes

(2008) Samuel Marguerat et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov.

(2008) S. Sakai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Roles of Coenzyme F420-Reducing Hydrogenases and Hydrogen- and F420-Dependent Methylenetetrahydromethanopterin Dehydrogenases in Reduction of F420 and Production of Hydrogen during Methanogenesis

(2008) E. L. Hendrickson et al.   JOURNAL OF BACTERIOLOGY

Global Responses of Methanococcus maripaludis to Specific Nutrient Limitations and Growth Rate

(2008) E. L. Hendrickson et al.   JOURNAL OF BACTERIOLOGY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli

(2007) Souichiro Kato et al.   ENVIRONMENTAL MICROBIOLOGY