Environmental properties of cells improve machine learning-based phenotype recognition accuracy

Advanced Cell Classifier: User-Friendly Machine-Learning-Based Software for Discovering Phenotypes in High-Content Imaging Data

(2017) Filippo Piccinini et al.   Cell Systems

CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets

(2016) David Dao et al.   BIOINFORMATICS

CP-CHARM: segmentation-free image classification made accessible

(2016) Virginie Uhlmann et al.   BMC BIOINFORMATICS

Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours

(2016) Csaba Molnar et al.   Scientific Reports

High-Content Analysis of Sequential Events during the Early Phase of Influenza A Virus Infection

(2013) Indranil Banerjee et al.   PLoS One

A few useful things to know about machine learning

(2012) Pedro Domingos   COMMUNICATIONS OF THE ACM

SLIC Superpixels Compared to State-of-the-Art Superpixel Methods

(2012) R. Achanta et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Annotated high-throughput microscopy image sets for validation

(2012) Vebjorn Ljosa et al.   NATURE METHODS

Enhanced CellClassifier: a multi-class classification tool for microscopy images

(2010) Benjamin Misselwitz et al.   BMC BIOINFORMATICS

Systems microscopy: An emerging strategy for the life sciences

(2010) John G. Lock et al.   EXPERIMENTAL CELL RESEARCH

High-Content Phenotypic Profiling of Drug Response Signatures across Distinct Cancer Cells

(2010) P. D. Caie et al.   MOLECULAR CANCER THERAPEUTICS

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

(2010) Beate Neumann et al.   NATURE

CellClassifier: supervised learning of cellular phenotypes

(2009) Pauli Rämö et al.   BIOINFORMATICS

Population context determines cell-to-cell variability in endocytosis and virus infection

(2009) Berend Snijder et al.   NATURE

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

(2009) Thouis R. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

(2008) Thouis R Jones et al.   BMC BIOINFORMATICS

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Control of cell fate by the formation of an architecturally complex bacterial community

(2008) H. Vlamakis et al.   GENES & DEVELOPMENT

WND-CHARM: Multi-purpose image classification using compound image transforms

(2008) Nikita Orlov et al.   PATTERN RECOGNITION LETTERS