Long-read genome sequence assembly provides insight into ongoing retroviral invasion of the koala germline

Infection with koala retrovirus subgroup B (KoRV-B), but not KoRV-A, is associated with chlamydial disease in free-ranging koalas (Phascolarctos cinereus)

(2017) Courtney A. Waugh et al.   Scientific Reports

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Genetic Diversity of Koala Retroviral Envelopes

(2015) Wenqin Xu et al.   Viruses-Basel

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models

(2014) Travis J Wheeler et al.   BMC BIOINFORMATICS

Proliferation of Endogenous Retroviruses in the Early Stages of a Host Germ Line Invasion

(2014) Yasuko Ishida et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Heterogeneity of koala retrovirus isolates

(2013) Sayumi Shimode et al.   FEBS LETTERS

The biology of the glucocorticoid receptor: New signaling mechanisms in health and disease

(2013) Robert H. Oakley et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

An exogenous retrovirus isolated from koalas with malignant neoplasias in a US zoo

(2013) W. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Koala retroviruses: characterization and impact on the life of koalas

(2013) Joachim Denner et al.   Retrovirology

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Endogenous retroviruses

(2008) R. Tarlinton et al.   CELLULAR AND MOLECULAR LIFE SCIENCES