Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins

Pandora formicae , a specialist ant pathogenic fungus: New insights into biology and taxonomy

(2017) Joanna Małagocka et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes

(2016) Kevin Lebrigand et al.   PLoS Genetics

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation

(2015) Charissa de Bekker et al.   BMC GENOMICS

Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

(2015) Duangdao Wichadakul et al.   BMC GENOMICS

Cross-talk in host–parasite associations: What do past and recent proteomics approaches tell us?

(2015) Chérif Chetouhi et al.   INFECTION GENETICS AND EVOLUTION

Transcriptome of an entomophthoralean fungus (Pandora formicae) shows molecular machinery adjusted for successful host exploitation and transmission

(2015) Joanna Małagocka et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Unravelling the diversity behind the Ophiocordyceps unilateralis (Ophiocordycipitaceae) complex: Three new species of zombie-ant fungi from the Brazilian Amazon

(2015) João Paulo Machado Araújo et al.   Phytotaxa

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Species-specific ant brain manipulation by a specialized fungal parasite

(2014) Charissa de Bekker et al.   BMC EVOLUTIONARY BIOLOGY

Comparative Genomics and Transcriptomics Analyses Reveal Divergent Lifestyle Features of Nematode Endoparasitic Fungus Hirsutella minnesotensis

(2014) Yiling Lai et al.   Genome Biology and Evolution

Long-Term Disease Dynamics for a Specialized Parasite of Ant Societies: A Field Study

(2014) Raquel G. Loreto et al.   PLoS One

Genome survey uncovers the secrets of sex and lifestyle in caterpillar fungus

(2013) Xiao Hu et al.   CHINESE SCIENCE BULLETIN

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

(2013) Kathryn E. Bushley et al.   PLoS Genetics

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci

(2013) Christopher L. Schardl et al.   PLoS Genetics

Termitomycesphins G and H, Additional Cerebrosides from the Edible Chinese MushroomTermitomyces albuminosus

(2012) Yuan QU et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana

(2012) Guohua Xiao et al.   Scientific Reports

Purpureocillium, a new genus for the medically important Paecilomyces lilacinus

(2011) Jennifer Luangsa-ard et al.   FEMS MICROBIOLOGY LETTERS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

(2011) M. B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

Hidden Diversity Behind the Zombie-Ant Fungus Ophiocordyceps unilateralis: Four New Species Described from Carpenter Ants in Minas Gerais, Brazil

(2011) Harry C. Evans et al.   PLoS One

Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

(2011) Qiang Gao et al.   PLoS Genetics

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Single cell transcriptomics of neighboring hyphae of Aspergillus niger

(2011) Charissa de Bekker et al.   GENOME BIOLOGY

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Behavioral mechanisms and morphological symptoms of zombie ants dying from fungal infection

(2011) David P Hughes et al.   BMC ECOLOGY

Ancient death-grip leaf scars reveal ant-fungal parasitism

(2010) D. P. Hughes et al.   Biology Letters

SMURF: Genomic mapping of fungal secondary metabolite clusters

(2010) Nora Khaldi et al.   FUNGAL GENETICS AND BIOLOGY

Ophiocordyceps pulvinata sp. nov., a pathogen with a reduced stroma

(2010) Ryan M. Kepler et al.   MYCOSCIENCE

Secondary metabolites from entomopathogenic Hypocrealean fungi

(2010) István Molnár et al.   NATURAL PRODUCT REPORTS

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH