The extraordinary variation of the organellar genomes of the Aneura pinguis revealed advanced cryptic speciation of the early land plants

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Infraspecific variation within and across complete organellar genomes and nuclear ribosomal repeats in a moss

(2016) Lily R. Lewis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparing three complete mitochondrial genomes of the moss genus Orthotrichum Hedw.

(2016) Beatriz Vigalondo et al.   Mitochondrial DNA Part B-Resources

Genomic Resources of Three Pulsatilla Species Reveal Evolutionary Hotspots, Species-Specific Sites and Variable Plastid Structure in the Family Ranunculaceae

(2015) Monika Szczecińska et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Gene-Wide Identification of Episodic Selection

(2015) Ben Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial phylogenomics supports splitting the traditionally conceived genus Racomitrium (Bryophyta: Grimmiaceae)

(2015) Jakub Sawicki et al.   NOVA HEDWIGIA

The complete mitochondrial genome of the cryptic species C of Aneura pinguis

(2015) Kamil Myszczyński et al.   Mitochondrial DNA Part A

Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: The tortoise and the hare IV

(2014) Joey Shaw et al.   AMERICAN JOURNAL OF BOTANY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Investigating the Path of Plastid Genome Degradation in an Early-Transitional Clade of Heterotrophic Orchids, and Implications for Heterotrophic Angiosperms

(2014) Craig F. Barrett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Volatile compounds in cryptic species of the Aneura pinguis complex and Aneura maxima (Marchantiophyta, Metzgeriidae)

(2014) Rafał Wawrzyniak et al.   PHYTOCHEMISTRY

Plastid and nuclear genomic resources of a relict and endangered plant species: Chamaedaphne calyculata (L.) Moench (Ericaceae)

(2014) Monika SZCZECIŃSKA et al.   TURKISH JOURNAL OF BOTANY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Species delimitation and cryptic diversity in the moss genus Scleropodium (Brachytheciaceae)

(2012) Benjamin E. Carter   MOLECULAR PHYLOGENETICS AND EVOLUTION

Formalizing morphologically cryptic biological entities: New insights from DNA taxonomy, hybridization, and biogeography in the leafy liverwort Porella platyphylla (Jungermanniopsida, Porellales)

(2011) Jochen Heinrichs et al.   AMERICAN JOURNAL OF BOTANY

Molecular data do not support the current division of Orthotrichum (Bryophyta) species with immersed stomata

(2011) Jakub SAWICKI et al.   Journal of Systematics and Evolution

Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes

(2010) Melvin J Oliver et al.   BMC GENOMICS

A complete mitochondrial genome of wheat (Triticum aestivum cv. Chinese Yumai), and fast evolving mitochondrial genes in higher plants

(2010) Peng Cui et al.   JOURNAL OF GENETICS

Phylogeny of the leafy liverwort Ptilidium: Cryptic speciation and shared haplotypes between the Northern and Southern Hemispheres

(2010) Hans-Peter Kreier et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

One species or at least eight? Delimitation and distribution of Frullania tamarisci (L.) Dumort. s. l. (Jungermanniopsida, Porellales) inferred from nuclear and chloroplast DNA markers

(2010) Jochen Heinrichs et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The complete mitochondrial genome sequence of the liverwort Pleurozia purpurea reveals extremely conservative mitochondrial genome evolution in liverworts

(2009) Bin Wang et al.   CURRENT GENETICS

The complete mitochondrial genome sequence of the hornwort Phaeoceros laevis: retention of many ancient pseudogenes and conservative evolution of mitochondrial genomes in hornworts

(2009) Jia-Yu Xue et al.   CURRENT GENETICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Complete Mitochondrial Genome Sequence of the Hornwort Megaceros aenigmaticus Shows a Mixed Mode of Conservative Yet Dynamic Evolution in Early Land Plant Mitochondrial Genomes

(2009) Libo Li et al.   JOURNAL OF MOLECULAR EVOLUTION

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK

(2008) Kurt M. Neubig et al.   PLANT SYSTEMATICS AND EVOLUTION

Evidence for Positive Selection in Putative Virulence Factors within the Paracoccidioides brasiliensis Species Complex

(2008) Daniel R. Matute et al.   PLoS Neglected Tropical Diseases

Angiosperm mitochondrial genomes and mutations

(2007) Tomohiko Kubo et al.   MITOCHONDRION

Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

(2007) N. J. Wickett et al.   MOLECULAR BIOLOGY AND EVOLUTION