Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle

Differential effects of monensin and a blend of essential oils on rumen microbiota composition of transition dairy cows

(2017) M. Schären et al.   JOURNAL OF DAIRY SCIENCE

Metagenomic assessment of the functional potential of the rumen microbiome in Holstein dairy cows

(2016) Dipti W. Pitta et al.   ANAEROBE

Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella

(2016) Patrick F. McDermott et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Metagenomic analysis of rumen microbial population in dairy heifers fed a high grain diet supplemented with dicarboxylic acids or polyphenols

(2016) Roberta De Nardi et al.   BMC Veterinary Research

Effect of ractopamine hydrochloride (Optaflexx) dose and duration on growth performance and carcass characteristics of finishing steers1

(2016) C. J. Bittner et al.   JOURNAL OF ANIMAL SCIENCE

A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds

(2016) Patrick Munk et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Use of Shotgun Metagenome Sequencing To Detect Fecal Colonization with Multidrug-Resistant Bacteria in Children

(2016) Heidi Andersen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Resurrecting the intestinal microbiota to combat antibiotic-resistant pathogens

(2016) Eric G. Pamer   SCIENCE

Resistome diversity in cattle and the environment decreases during beef production

(2016) Noelle R Noyes et al.   eLife

Metagenomic Analysis of the Rumen Microbiome of Steers with Wheat-Induced Frothy Bloat

(2016) D. W. Pitta et al.   Frontiers in Microbiology

Castration influences intestinal microflora and induces abdominal obesity in high-fat diet-fed mice

(2016) Naoki Harada et al.   Scientific Reports

Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.

(2015) S. Zhao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

WGS accurately predicts antimicrobial resistance inEscherichia coli

(2015) Gregory H. Tyson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Effect of in-feed administration and withdrawal of tylosin phosphate on antibiotic resistance in enterococci isolated from feedlot steers

(2015) Alicia G. Beukers et al.   Frontiers in Microbiology

Shotgun Metagenomic Sequencing Reveals Functional Genes and Microbiome Associated with Bovine Digital Dermatitis

(2015) Martin Zinicola et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

(2014) Johan Bengtsson-Palme et al.   Frontiers in Microbiology

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

(2013) C. E. Robertson et al.   BIOINFORMATICS

Investigation of ruminal bacterial diversity in dairy cattle fed supplementary monensin alone and in combination with fat, using pyrosequencing analysis

(2013) M. Kim et al.   CANADIAN JOURNAL OF MICROBIOLOGY

MEAT SCIENCE AND MUSCLE BIOLOGY SYMPOSIUM—Implant and beta agonist impacts on beef palatability1

(2013) A. J. Garmyn et al.   JOURNAL OF ANIMAL SCIENCE

MEAT SCIENCE AND MUSCLE BIOLOGY SYMPOSIUM—Anabolic implants and meat quality1

(2013) S. K. Duckett et al.   JOURNAL OF ANIMAL SCIENCE

A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA

(2013) George R. Feehery et al.   PLoS One

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

(2013) Marcelo Nagem Valério de Oliveira et al.   VETERINARY MICROBIOLOGY

Structure and Antimicrobial Properties of Monensin A and Its Derivatives: Summary of the Achievements

(2013) Daniel Łowicki et al.   Biomed Research International

Quantifying the effect of monensin dose on the rumen volatile fatty acid profile in high-grain-fed beef cattle1

(2012) J. L. Ellis et al.   JOURNAL OF ANIMAL SCIENCE

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Shifts in the Rumen Microbiota Due to the Type of Carbohydrate and Level of Protein Ingested by Dairy Cattle Are Associated with Changes in Rumen Fermentation

(2012) Alejandro Belanche et al.   JOURNAL OF NUTRITION

Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study

(2012) Roberto Flores et al.   Journal of Translational Medicine

The role of the gut microbiota in nutrition and health

(2012) Harry J. Flint et al.   Nature Reviews Gastroenterology & Hepatology

The influence of diet on the gut microbiota

(2012) Karen P. Scott et al.   PHARMACOLOGICAL RESEARCH

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiome analysis of dairy cows fed pasture or total mixed ration diets

(2011) Alexandre B. de Menezes et al.   FEMS MICROBIOLOGY ECOLOGY

Shifting the balance: antibiotic effects on host–microbiota mutualism

(2011) Benjamin P. Willing et al.   NATURE REVIEWS MICROBIOLOGY

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach

(2010) Lisa M. Durso et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity

(2010) Thomas B Clarke et al.   NATURE MEDICINE

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of dietary monensin on the bacterial population structure of dairy cattle colonic contents

(2009) Jeffery A. McGarvey et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The effect of the macrolide antibiotic tylosin on microbial diversity in the canine small intestine as demonstrated by massive parallel 16S rRNA gene sequencing

(2009) Jan S Suchodolski et al.   BMC MICROBIOLOGY

The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age

(2009) D Mariat et al.   BMC MICROBIOLOGY

Effect of essential oils, tylosin, and monensin on finishing steer performance, carcass characteristics, liver abscesses, ruminal fermentation, and digestibility1

(2009) N. F. Meyer et al.   JOURNAL OF ANIMAL SCIENCE

Effects of antibiotics and oil on microbial profiles and fermentation in mixed cultures of ruminal microorganisms

(2009) M.C. Johnson et al.   JOURNAL OF DAIRY SCIENCE

Effect of monensin feeding and withdrawal on populations of individual bacterial species in the rumen of lactating dairy cows fed high-starch rations

(2008) Paul J. Weimer et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The effects of ractopamine-hydrogen chloride (Optaflexx) on performance, carcass characteristics, and meat quality of finishing feedlot heifers1

(2008) M. J. Quinn et al.   JOURNAL OF ANIMAL SCIENCE

Effects of feeding wet corn distillers grains with solubles with or without monensin and tylosin on the prevalence and antimicrobial susceptibilities of fecal foodborne pathogenic and commensal bacteria in feedlot cattle1

(2008) M. E. Jacob et al.   JOURNAL OF ANIMAL SCIENCE