NetDiff – Bayesian model selection for differential gene regulatory network inference

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks

(2016) Ting Wang et al.   PLoS Computational Biology

PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

(2015) Jan Grau et al.   BIOINFORMATICS

C9ORF72 GGGGCC Expanded Repeats Produce Splicing Dysregulation which Correlates with Disease Severity in Amyotrophic Lateral Sclerosis

(2015) Johnathan Cooper-Knock et al.   PLoS One

Graphical modelling of molecular networks underlying sporadic inclusion body myositis

(2013) Thomas Thorne et al.   Molecular BioSystems

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

NR2B-Containing NMDA Receptors Expression and Their Relationship to Apoptosis in Hippocampus of Alzheimer’s Disease-Like Rats

(2012) Zhi’an Liu et al.   NEUROCHEMICAL RESEARCH

Differential network entropy reveals cancer system hallmarks

(2012) James West et al.   Scientific Reports

Expanded GGGGCC Hexanucleotide Repeat in Noncoding Region of C9ORF72 Causes Chromosome 9p-Linked FTD and ALS

(2011) Mariely DeJesus-Hernandez et al.   NEURON

Rewiring of Genetic Networks in Response to DNA Damage

(2010) S. Bandyopadhyay et al.   SCIENCE

Regularized estimation of large-scale gene association networks using graphical Gaussian models

(2009) Nicole Krämer et al.   BMC BIOINFORMATICS

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS