Functional and structural characterization of a novel putative cysteine protease cell wall-modifying multi-domain enzyme selected from a microbial metagenome

The discovery of modular binding domains: building blocks of cell signalling

(2015) Bruce J. Mayer   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains

(2015) Qingping Xu et al.   mBio

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

ThreaDom: extracting protein domain boundary information from multiple threading alignments

(2013) Zhidong Xue et al.   BIOINFORMATICS

The role of hydrolases in bacterial cell-wall growth

(2013) Timothy K Lee et al.   CURRENT OPINION IN MICROBIOLOGY

Commercial proteases: Present and future

(2013) Qing Li et al.   FEBS LETTERS

Accurate assessment of mass, models and resolution by small-angle scattering

(2013) Robert P. Rambo et al.   NATURE

Scalable web services for the PSIPRED Protein Analysis Workbench

(2013) Daniel W. A. Buchan et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases

(2013) Maly Levy-Assaraf et al.   PLoS One

Structure and Function of a Novel Cellulase 5 from Sugarcane Soil Metagenome

(2013) Thabata M. Alvarez et al.   PLoS One

3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

(2013) Debswapna Bhattacharya et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

KoBaMIN: a knowledge-based minimization web server for protein structure refinement

(2012) J. P. G. L. M. Rodrigues et al.   NUCLEIC ACIDS RESEARCH

Computational identification of self-inhibitory peptides from envelope proteins

(2012) Yongtao Xu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Beyond growth: novel functions for bacterial cell wall hydrolases

(2012) Timna J. Wyckoff et al.   TRENDS IN MICROBIOLOGY

Bacteria and Archaea community structure in the rumen microbiome of goats (Capra hircus) from the semiarid region of Brazil

(2011) Isabel S. Cunha et al.   ANAEROBE

Peptidoglycan turnover and recycling in Gram-positive bacteria

(2011) Jan Reith et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization

(2011) Dong Xu et al.   BIOPHYSICAL JOURNAL

Functional characterization of NopT1 and NopT2, two type III effectors of Bradyrhizobium japonicum

(2011) Christos T. Fotiadis et al.   FEMS MICROBIOLOGY LETTERS

Localization of the Clostridium difficile Cysteine Protease Cwp84 and Insights into Its Maturation Process

(2011) D. ChapetonMontes et al.   JOURNAL OF BACTERIOLOGY

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2011) N. D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Complexes of Dendrimers with Bovine Serum Albumin

(2010) J. S. Mandeville et al.   BIOMACROMOLECULES

Assembly of the Type II Secretion System: Identification of ExeA Residues Critical for Peptidoglycan Binding and Secretin Multimerization

(2010) G. Li et al.   JOURNAL OF BACTERIOLOGY

Structure and Functional Regulation of RipA, a Mycobacterial Enzyme Essential for Daughter Cell Separation

(2010) Alessia Ruggiero et al.   STRUCTURE

Autoproteolytic Activation of Bacterial Toxins

(2010) Aimee Shen   Toxins

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Isolation and partial characterization of novel genes encoding acidic cellulases from metagenomes of buffalo rumens

(2009) C.-J. Duan et al.   JOURNAL OF APPLIED MICROBIOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8

(2009) Elmar Krieger et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural Basis of Murein Peptide Specificity of a γ-D-Glutamyl-L-Diamino Acid Endopeptidase

(2009) Qingping Xu et al.   STRUCTURE

Solution NMR Structure of the NlpC/P60 Domain of Lipoprotein Spr fromEscherichia coli: Structural Evidence for a Novel Cysteine Peptidase Catalytic Triad†

(2008) James M. Aramini et al.   BIOCHEMISTRY

Discovering Functional Novelty in Metagenomes: Examples from Light-Mediated Processes

(2008) A. H. Singh et al.   JOURNAL OF BACTERIOLOGY

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH