Hybrid Markov-mass action law model for cell activation by rare binding events: Application to calcium induced vesicular release at neuronal synapses

Search Time for a Small Ribbon and Application to Vesicular Release at Neuronal Synapses

(2015) C. Guerrier et al.   MULTISCALE MODELING & SIMULATION

Improved signaling as a result of randomness in synaptic vesicle release

(2015) Calvin Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse

(2015) Daniel Keller et al.   PLoS Computational Biology

The Narrow Escape Problem

(2014) D. Holcman et al.   SIAM REVIEW

Stochastic simulation in systems biology

(2014) Tamás Székely et al.   Computational and Structural Biotechnology Journal

An Excess-Calcium-Binding-Site Model Predicts Neurotransmitter Release at the Neuromuscular Junction

(2013) Markus Dittrich et al.   BIOPHYSICAL JOURNAL

AMPARs and Synaptic Plasticity: The Last 25 Years

(2013) Richard L. Huganir et al.   NEURON

Discrete-State Stochastic Models of Calcium-Regulated Calcium Influx and Subspace Dynamics Are Not Well-Approximated by ODEs That Neglect Concentration Fluctuations

(2012) Seth H. Weinberg et al.   Computational and Mathematical Methods in Medicine

Central synapses release a resource-efficient amount of glutamate

(2012) Leonid P Savtchenko et al.   NATURE NEUROSCIENCE

The Hemifused State on the Pathway to Membrane Fusion

(2012) Jason M. Warner et al.   PHYSICAL REVIEW LETTERS

Using default constraints of the spindle assembly checkpoint to estimate the associated chemical rates

(2012) Khanh Dao Duc et al.   BMC Biophysics

The two-regime method for optimizing stochastic reaction-diffusion simulations

(2011) M. B. Flegg et al.   Journal of the Royal Society Interface

Barriers to Diffusion in Dendrites and Estimation of Calcium Spread Following Synaptic Inputs

(2011) Armin Biess et al.   PLoS Computational Biology

Threshold activation for stochastic chemical reactions in microdomains

(2010) K. Dao Duc et al.   PHYSICAL REVIEW E

Neuromodulation at Single Presynaptic Boutons of Cerebellar Parallel Fibers Is Determined by Bouton Size and Basal Action Potential-Evoked Ca Transient Amplitude

(2009) W. Zhang et al.   JOURNAL OF NEUROSCIENCE

A General Model of Synaptic Transmission and Short-Term Plasticity

(2009) Bin Pan et al.   NEURON

Multiscale Modeling of Chemical Kinetics via the Master Equation

(2008) Shev MacNamara et al.   MULTISCALE MODELING & SIMULATION

Multiple Roles of Calcium Ions in the Regulation of Neurotransmitter Release

(2008) Erwin Neher et al.   NEURON