Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

Correlated light and electron microscopy: ultrastructure lights up!

(2015) Pascal de Boer et al.   NATURE METHODS

Bacterial microcompartments and the modular construction of microbial metabolism

(2015) Cheryl A. Kerfeld et al.   TRENDS IN MICROBIOLOGY

Wolbachia Utilize Host Actin for Efficient Maternal Transmission in Drosophila melanogaster

(2015) Irene L. G. Newton et al.   PLoS Pathogens

Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange

(2015) Cara L. Fiore et al.   Frontiers in Microbiology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Compartmentalization and organelle formation in bacteria

(2014) Elias Cornejo et al.   CURRENT OPINION IN CELL BIOLOGY

Revealing microbial functional activities in the Red Sea spongeStylissa carteriby metatranscriptomics

(2014) Lucas Moitinho-Silva et al.   ENVIRONMENTAL MICROBIOLOGY

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

Diverse Bacterial Microcompartment Organelles

(2014) C. Chowdhury et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

High Pressure Freezing/Freeze Substitution Fixation Improves the Ultrastructural Assessment of Wolbachia Endosymbiont – Filarial Nematode Host Interaction

(2014) Kerstin Fischer et al.   PLoS One

The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features

(2014) Janine Kamke et al.   PLoS One

Metagenomic Approaches for Exploiting Uncultivated Bacteria as a Resource for Novel Biosynthetic Enzymology

(2013) Micheal C. Wilson et al.   CHEMISTRY & BIOLOGY

New insights in the formation of polyhydroxyalkanoate granules (carbonosomes) and novel functions of poly(3-hydroxybutyrate)

(2013) Dieter Jendrossek et al.   ENVIRONMENTAL MICROBIOLOGY

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges

(2013) Janine Kamke et al.   ISME Journal

Polyphosphate Storage during Sporulation in the Gram-Negative Bacterium Acetonema longum

(2013) E. I. Tocheva et al.   JOURNAL OF BACTERIOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Distribution, formation and regulation of gas vesicles

(2012) Felicitas Pfeifer   NATURE REVIEWS MICROBIOLOGY

Genomic insights into the marine sponge microbiome

(2012) Ute Hentschel et al.   NATURE REVIEWS MICROBIOLOGY

Direct Image-Based Correlative Microscopy Technique for Coupling Identification and Structural Investigation of Bacterial Symbionts Associated with Metazoans

(2011) Sébastien Halary et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Signalling mechanisms of RhoGTPase regulation by the heterotrimeric G proteins G12 and G13

(2011) T. Kozasa et al.   JOURNAL OF BIOCHEMISTRY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

TonB-Dependent Transporters: Regulation, Structure, and Function

(2010) Nicholas Noinaj et al.   Annual Review of Microbiology

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

(2010) Alexander Siegl et al.   ISME Journal

Identifying Neuronal Lineages of Drosophila by Sequence Analysis of Axon Tracts

(2010) A. Cardona et al.   JOURNAL OF NEUROSCIENCE

Cell Biology of Prokaryotic Organelles

(2010) D. Murat et al.   Cold Spring Harbor Perspectives in Biology

Widespread Distribution of Poribacteria in Demospongiae

(2009) F. F. Lafi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Self-pressurized rapid freezing (SPRF): a novel cryofixation method for specimen preparation in electron microscopy

(2009) J.L.M. LEUNISSEN et al.   JOURNAL OF MICROSCOPY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS