Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection

Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice

(2015) Deepika Sharma et al.   Metallomics

Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice

(2015) Dandan Zhang et al.   PLANT SCIENCE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation

(2013) Feng Xu et al.   BMC GENOMICS

Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions

(2013) Michael Hackenberg et al.   BMC PLANT BIOLOGY

Contribution of Small RNA Pathway Components in Plant Immunity

(2013) Jang-Kyun Seo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

(2013) Yu-Chan Zhang et al.   NATURE BIOTECHNOLOGY

Ensembl Genomes 2013: scaling up access to genome-wide data

(2013) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

The Tomato Fni3 Lysine-63-Specific Ubiquitin-Conjugating Enzyme and Suv Ubiquitin E2 Variant Positively Regulate Plant Immunity

(2013) R. V. Mural et al.   PLANT CELL

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

(2013) Franck Rapaport et al.   GENOME BIOLOGY

Nutritional immunity: transition metals at the pathogen–host interface

(2012) M. Indriati Hood et al.   NATURE REVIEWS MICROBIOLOGY

Emerging role for RNA-based regulation in plant immunity

(2012) Dorothee Staiger et al.   NEW PHYTOLOGIST

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast

(2012) Lixia Hua et al.   THEORETICAL AND APPLIED GENETICS

Plant NB-LRR signaling: upstreams and downstreams

(2011) James Mitch Elmore et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses

(2011) Ananda Mustafiz et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Fungal Secretome Database: Integrated platform for annotation of fungal secretomes

(2010) Jaeyoung Choi et al.   BMC GENOMICS

Identification and analysis of in planta expressed genes of Magnaporthe oryzae

(2010) Soonok Kim et al.   BMC GENOMICS

Recent advances in rice blast effector research

(2010) Barbara Valent et al.   CURRENT OPINION IN PLANT BIOLOGY

Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzaeinteraction

(2010) JINLING LIU et al.   MOLECULAR PLANT PATHOLOGY

The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication

(2010) Chun Zhai et al.   NEW PHYTOLOGIST

The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes

(2010) Bin Yuan et al.   THEORETICAL AND APPLIED GENETICS

Control of RNA silencing and localization by endolysosomes

(2010) Derrick Gibbings et al.   TRENDS IN CELL BIOLOGY

Multiple distinct small RNAs originate from the same microRNA precursors

(2010) Weixiong Zhang et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

MAPK cascade signalling networks in plant defence

(2009) Andrea Pitzschke et al.   CURRENT OPINION IN PLANT BIOLOGY

Host small RNAs are big contributors to plant innate immunity

(2009) Chellappan Padmanabhan et al.   CURRENT OPINION IN PLANT BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR classRgene-derived novel miRNA in Brassica

(2008) Xiang-Feng He et al.   FEBS LETTERS

Two Adjacent Nucleotide-Binding Site-Leucine-Rich Repeat Class Genes Are Required to Confer Pikm-Specific Rice Blast Resistance

(2008) I. Ashikawa et al.   GENETICS

A Genome-Wide Meta-Analysis of Rice Blast Resistance Genes and Quantitative Trait Loci Provides New Insights into Partial and Complete Resistance

(2008) Elsa Ballini et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase

(2008) L. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA