Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms

Microbiological functioning, diversity, and structure of bacterial communities in ultramafic soils from a tropical savanna

(2015) Marco Pessoa-Filho et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Effects of diurnal temperature variation on microbial community and petroleum hydrocarbon biodegradation in contaminated soils from a sub-Arctic site

(2015) Ali Akbari et al.   ENVIRONMENTAL MICROBIOLOGY

Testing biodiversity-ecosystem functioning relationship in the world’s largest grassland: overview of the IMGRE project

(2015) Jianguo Wu et al.   LANDSCAPE ECOLOGY

Molecular Mechanisms of Enhanced Bacterial Growth on Hexadecane with Red Clay

(2015) Jaejoon Jung et al.   MICROBIAL ECOLOGY

Bacterial Targets as Potential Indicators of Diesel Fuel Toxicity in Subantarctic Soils

(2014) Josie van Dorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Loss of microbial diversity in soils is coincident with reductions in some specialized functions

(2014) Brajesh K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of Sulfamethazine on Denitrification and the Associated N2O Release in Estuarine and Coastal Sediments

(2014) Lijun Hou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Effect of Red Clay on Diesel Bioremediation and Soil Bacterial Community

(2014) Jaejoon Jung et al.   MICROBIAL ECOLOGY

Characterization of the Medium- and Long-Chain n-Alkanes Degrading Pseudomonas aeruginosa Strain SJTD-1 and Its Alkane Hydroxylase Genes

(2014) Huan Liu et al.   PLoS One

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biodegradation of variable-chain-length n-alkanes in Rhodococcus opacus R7 and the involvement of an alkane hydroxylase system in the metabolism

(2014) Jessica Zampolli et al.   AMB Express

Alteration of microbial community structure affects diesel biodegradation in an Arctic soil

(2013) Terrence H. Bell et al.   FEMS MICROBIOLOGY ECOLOGY

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

Identification of 100 fundamental ecological questions

(2013) William J. Sutherland et al.   JOURNAL OF ECOLOGY

Enhanced ex situ bioremediation of crude oil contaminated beach sand by supplementation with nutrients and rhamnolipids

(2013) M. Nikolopoulou et al.   MARINE POLLUTION BULLETIN

Biodiversity and multifunctionality in a microbial community: a novel theoretical approach to quantify functional redundancy

(2013) T. Miki et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stability of soil microbial structure and activity depends on microbial diversity

(2013) Vincent Tardy et al.   Environmental Microbiology Reports

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of nutritional input and diesel contamination on soil enzyme activities and microbial communities in antarctic soils

(2012) Jiwon Han et al.   JOURNAL OF MICROBIOLOGY

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Abundance and Diversity of n-Alkane-Degrading Bacteria in a Forest Soil Co-Contaminated with Hydrocarbons and Metals: A Molecular Study on alkB Homologous Genes

(2011) Alfredo Pérez-de-Mora et al.   MICROBIAL ECOLOGY

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils

(2011) Jaejoon Jung et al.   RESEARCH IN MICROBIOLOGY

Complexity of cell–cell interactions between Pseudomonas sp. AS1 and Acinetobacter oleivorans DR1: metabolic commensalism, biofilm formation and quorum quenching

(2011) Hyoju Seo et al.   RESEARCH IN MICROBIOLOGY

Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils

(2011) Catriona A. Macdonald et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structural and functional response of soil microbiota to addition of plant substrate are moderated by soil Cu levels

(2010) Steven Alan Wakelin et al.   BIOLOGY AND FERTILITY OF SOILS

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China

(2010) Yuting Liang et al.   ISME Journal

Protection against diesel oil toxicity by sodium chloride-induced exopolysaccharides in Acinetobacter sp. strain DR1

(2009) Yoon-Suk Kang et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS