Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

Characterization of Bacterial Communities in Sediments Receiving Various Wastewater Effluents with High-Throughput Sequencing Analysis

(2014) Xiao-Ming Lu et al.   MICROBIAL ECOLOGY

Use of pyrosequencing to explore the benthic bacterial community structure in a river impacted by wastewater treatment plant discharges

(2014) Elisabet Marti et al.   RESEARCH IN MICROBIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Wastewater Treatment Effluent Reduces the Abundance and Diversity of Benthic Bacterial Communities in Urban and Suburban Rivers

(2013) Bradley Drury et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of solid polymeric organic materials for use in bioreactive sediment capping to stimulate the degradation of chlorinated aliphatic hydrocarbons

(2013) Siavash Atashgahi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A review of allochthonous organic matter dynamics and metabolism in streams

(2013) Jennifer L. Tank et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

The xylan utilization system of the plant pathogenXanthomonas campestrispvcampestriscontrols epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts

(2013) Guillaume Déjean et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community

(2012) Laura A Hug et al.   BMC GENOMICS

Small-scale oxygen distribution determines the vinyl chloride biodegradation pathway in surficial sediments of riverbed hyporheic zones

(2012) Siavash Atashgahi et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenomic analysis of a stable trichloroethene-degrading microbial community

(2012) Vanessa L Brisson et al.   ISME Journal

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Bacterial Communities in the Sediments of Dianchi Lake, a Partitioned Eutrophic Waterbody in China

(2012) Yaohui Bai et al.   PLoS One

Pyrosequencing Reveals the Influence of Organic and Conventional Farming Systems on Bacterial Communities

(2012) Ru Li et al.   PLoS One

Temporal variations in natural attenuation of chlorinated aliphatic hydrocarbons in eutrophic river sediments impacted by a contaminated groundwater plume

(2012) Kelly Hamonts et al.   WATER RESEARCH

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

(2011) Bartholomeus van den Bogert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Bacterial community dynamics in the hyporheic zone of an intermittent stream

(2011) Catherine M Febria et al.   ISME Journal

Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

(2011) Zulma Rocío Suárez-Moreno et al.   MICROBIAL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Relation of Genetic and Environmental Factors to Systemic Inflammatory Biomarker Concentrations

(2009) Renate B. Schnabel et al.   Circulation-Cardiovascular Genetics

Contribution of Wastewater Treatment Plant Effluents to Nutrient Dynamics in Aquatic Systems: A Review

(2009) Richard O. Carey et al.   ENVIRONMENTAL MANAGEMENT

Assessment of the Intrinsic Bioremediation Capacity of an Eutrophic River Sediment Polluted by Discharging Chlorinated Aliphatic Hydrocarbons: A Compound-Specific Isotope Approach

(2009) Thomas K. Kuhn et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Factors Determining the Attenuation of Chlorinated Aliphatic Hydrocarbons in Eutrophic River Sediment Impacted by Discharging Polluted Groundwater

(2009) Kelly Hamonts et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterizing seasonal changes in physicochemistry and bacterial community composition in hyporheic sediments

(2009) C. M. Febria et al.   HYDROBIOLOGIA

Evaluating the fate of chlorinated ethenes in streambed sediments by combining stable isotope, geochemical and microbial methods

(2009) Yumiko Abe et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Cultivation of Uncultured Chloroflexi Subphyla: Significance and Ecophysiology of Formerly Uncultured Chloroflexi 'Subphylum I' with Natural and Biotechnological Relevance

(2009) Takeshi Yamada et al.   MICROBES AND ENVIRONMENTS

Habitat Heterogeneity and Associated Microbial Community Structure in a Small-Scale Floodplain Hyporheic Flow Path

(2009) Jennifer L. Lowell et al.   MICROBIAL ECOLOGY

Effect of Wastewater Treatment Plant Effluent on Microbial Function and Community Structure in the Sediment of a Freshwater Stream with Variable Seasonal Flow

(2008) S. A. Wakelin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global Change and the Ecology of Cities

(2008) N. B. Grimm et al.   SCIENCE