4.7 Article

Analytical Modelling of the Spread of Disease in Confined and Crowded Spaces

Journal

SCIENTIFIC REPORTS
Volume 4, Issue -, Pages -

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/srep04856

Keywords

-

Ask authors/readers for more resources

Since 1927 and until recently, most models describing the spread of disease have been of compartmental type, based on the assumption that populations are homogeneous and well-mixed. Recent models have utilised agent-based models and complex networks to explicitly study heterogeneous interaction patterns, but this leads to an increasing computational complexity. Compartmental models are appealing because of their simplicity, but their parameters, especially the transmission rate, are complex and depend on a number of factors, which makes it hard to predict how a change of a single environmental, demographic, or epidemiological factor will affect the population. Therefore, in this contribution we propose a middle ground, utilising crowd-behaviour research to improve compartmental models in crowded situations. We show how both the rate of infection as well as the walking speed depend on the local crowd density around an infected individual. The combined effect is that the rate of infection at a population scale has an analytically tractable non-linear dependency on crowd density. We model the spread of a hypothetical disease in a corridor and compare our new model with a typical compartmental model, which highlights the regime in which current models may not produce credible results.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Infectious Diseases

An open label, randomised controlled trial of rifapentine versus rifampicin based short course regimens for the treatment of latent tuberculosis in England: the HALT LTBI pilot study

J. Surey, H. R. Stagg, T. A. Yates, M. Lipman, P. J. White, A. Charlett, L. Munoz, L. Gosce, M. X. Rangaka, M. Francis, V. Hack, H. Kunst, I. Abubakar

Summary: The pilot trial in the UK compared the effectiveness of weekly rifapentine/isoniazid regimen with daily rifampicin/isoniazid regimen in treating latent tuberculosis infection. The study found similar completion rates and adverse event profiles between the two regimens.

BMC INFECTIOUS DISEASES (2021)

Article Infectious Diseases

Tackling TB in migrants arriving at Europe's southern border

Lara Gosce, Enrico Girardi, Kasim Allel, Daniela Maria Cirillo, Lucia Barcellini, Giovanna Stancanelli, Alberto Matteelli, Hassan Hagphrast-Bidgoli, Ibrahim Abubakar

Summary: In the European Union region, over a quarter of individuals diagnosed with tuberculosis [TB] are born outside of the area, and this proportion has been steadily increasing. Italy, a country with low TB incidence, has over 50% of TB cases in the foreign-born population due to high numbers of migrants entering the country. Active TB screening in newly arrived migrants is a cost-effective intervention to ensure early diagnosis and reduce the spread of TB in areas with migrants arriving from high TB risk settings.

INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2021)

Letter Respiratory System

Screening for tuberculosis among high-risk groups attending London emergency departments: a prospective observational study

Rishi K. Gupta, Swaib A. Lule, Maria Krutikov, Lara Gosce, Nathan Green, Jo Southern, Ambreen Imran, Robert W. Aldridge, Heinke Kunst, Marc Lipman, William Lynn, Helen Burgess, Asif Rahman, Dee Menezes, Ananna Rahman, Simon Tiberi, Peter J. White, Ibrahim Abubakar

EUROPEAN RESPIRATORY JOURNAL (2021)

Editorial Material Infectious Diseases

World Tuberculosis Day 2021 Theme - 'The Clock is Ticking' - and the world is running out of time to deliver the United Nations General Assembly commitments to End TB due to the COVID-19 pandemic

Alimuddin Zumla, Jeremiah Chakaya, Mishal Khan, Razia Fatima, Christian Wejse, Seif Al-Abri, Greg J. Fox, Jean Nachega, Nathan Kapata, Michael Knipper, Miriam Orcutt, Lara Gosce, Ibrahim Abubakar, Tumaini Joseph Nagu, Ferdinand Mugusi, Alice Kizny Gordon, Sivakumar Shanmugam, Nathan Lloyd Bachmann, Connie Lam, Vitali Sintchenko, Frauke Rudolf, Farhana Amanullah, Richard Kock, Najmul Haider, Marc Lipman, Michael King, Markus Maeurer, Delia Goletti, Linda Petrone, Aashifa Yaqoob, Simon Tiberi, Lucica Ditiu, Suvanand Sahu, Ben Marais, Assiya Marat Issayeva, Eskild Petersen

INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2021)

Article Engineering, Mechanical

Robustness of nonlinear parameter identification in the presence of process noise using control-based continuation

Sandor Beregi, David A. W. Barton, Djamel Rezgui, Simon A. Neild

Summary: In this study, a control-based continuation method was utilized to analyze the experimentally obtained periodically forced response of a nonlinear structure in the presence of process noise. The robustness of the method and its effectiveness in capturing system response were evaluated by identifying parameters of an associated model. It was found that the control-based continuation method is more reliable in extracting system information in the presence of high levels of noise, compared to open-loop parameter sweeps.

NONLINEAR DYNAMICS (2021)

Article Acoustics

Bi-stability induced by motion limiting constraints on boring bar tuned mass dampers

Zsolt Iklodi, David A. W. Barton, Zoltan Dombovari

Summary: This paper investigates the impact of displacement constraints on the attenuation performance of tuned mass dampers (TMDs) in boring and turning applications. Through time domain simulations and hybrid periodic orbit continuation, it is found that rigid body collisions can significantly hinder TMD damping performance and lead to resonance problems or machine tool chatter.

JOURNAL OF SOUND AND VIBRATION (2022)

Article Biochemical Research Methods

Optima TB: A tool to help optimally allocate tuberculosis spending

Lara Gosce, Gerard J. Abou Jaoude, David J. Kedziora, Clemens Benedikt, Azfar Hussain, Sarah Jarvis, Alena Skrahina, Dzmitry Klimuk, Henadz Hurevich, Feng Zhao, Nicole Fraser-Hurt, Nejma Cheikh, Marelize Gorgens, David J. Wilson, Romesh Abeysuriya, Rowan Martin-Hughes, Sherrie L. Kelly, Anna Roberts, Robyn M. Stuart, Tom Palmer, Jasmina Panovska-Griffiths, Cliff C. Kerr, David P. Wilson, Hassan Haghparast-Bidgoli, Jolene Skordis, Ibrahim Abubakar

Summary: The Optima TB tool aims to support analytical capacity and inform evidence-based priority setting processes for TB health benefits package design. It has been applied in countries like Belarus to demonstrate the potential impact of reallocating spending across existing and new interventions on TB outcomes.

PLOS COMPUTATIONAL BIOLOGY (2021)

Article Materials Science, Multidisciplinary

Topological characteristics and mechanical properties of uniaxially thermoformed auxetic foam

Qicheng Zhang, Wenjiang Lu, Fabrizio Scarpa, David Barton, Kathryn Rankin, Yunpeng Zhu, Zi-Qiang Lang, Hua-Xin Peng

Summary: The study presents a simplified procedure for manufacturing auxetic PU foam using a single direction thermoforming compression process on conventional open cell foam samples. Auxetic foams exhibit transverse isotropy with specific compression ratios required to achieve auxeticity. Numerical models built from 3D scans show good agreement with experimental data and help explain deformation mechanisms of auxetic foams.

MATERIALS & DESIGN (2021)

Article Engineering, Mechanical

Using scientific machine learning for experimental bifurcation analysis of dynamic systems

Sandor Beregi, David A. W. Barton, Djamel Rezgui, Simon Neild

Summary: This exploratory study focuses on training universal differential equation (UDE) models for physical nonlinear dynamical systems. The study demonstrates the effectiveness of augmenting mechanistic ordinary differential equation (ODE) models with machine-learnable structures. Both numerical simulations and physical experiments are used to collect training data, and neural networks and Gaussian processes are employed as universal approximators. The study highlights the accuracy and robustness of the UDE modelling approach, while also indicating the limitations of the current modelling framework.

MECHANICAL SYSTEMS AND SIGNAL PROCESSING (2023)

Article Engineering, Mechanical

Reinforcement learning and approximate Bayesian computation for model selection and parameter calibration applied to a nonlinear

T. G. Ritto, S. Beregi, D. A. W. Barton

Summary: This paper proposes a combined methodology of reinforcement learning and approximate Bayesian computation for model selection and parameter identification in the context of digital twins and machine learning tools. The experimental results show the promising potential of this method in model selection and parameter updating based on data.

MECHANICAL SYSTEMS AND SIGNAL PROCESSING (2022)

Article Acoustics

Equation-free bifurcation analysis of a stochastically excited Duffing oscillator

Zoltan Gabos, David A. W. Barton, Zoltan Dombovari

Summary: This paper presents a methodology based on pseudo arc-length continuation combined with the moment-map method to investigate dynamical systems with stochastic behaviour. It is shown that the introduction of noise leads to the destabilisation of stable periodic orbits over time. The deterministic bifurcation diagram is modified by introducing three different methods to approximate the mean first passage time of the stochastic system.

JOURNAL OF SOUND AND VIBRATION (2023)

Article Engineering, Mechanical

Modelling of physical systems with a Hopf bifurcation using mechanistic models and machine learning

K. H. Lee, D. A. W. Barton, L. Renson

Summary: We present a novel hybrid modelling approach that integrates a mechanistic model and a machine-learnt model for predicting limit cycle oscillations in physical systems with a Hopf bifurcation. The mechanistic model, in the form of an ordinary differential equation, captures the bifurcation structure of the system. Through machine learning techniques, a data-driven mapping is established between this model and experimental observations. The efficacy of the proposed method is demonstrated through numerical simulations on Van der Pol oscillator and a three-degree-of-freedom aeroelastic model, as well as its application to a physical aeroelastic structure in wind tunnel tests. The method is shown to be general, data-efficient, and accurate even without prior knowledge of the system other than its bifurcation structure.

MECHANICAL SYSTEMS AND SIGNAL PROCESSING (2023)

Article Engineering, Mechanical

Uncertainty quantification in mechanistic epidemic models via cross-entropy approximate Bayesian computation

Americo Cunha Jr, David A. W. Barton, Thiago G. G. Ritto

Summary: This paper proposes a data-driven approximate Bayesian computation framework for parameter estimation and uncertainty quantification of epidemic models. The framework incorporates two novel approaches: identification of initial conditions using plausible dynamic states compatible with observational data, and learning of an informative prior distribution for the model parameters using the cross-entropy method. The effectiveness of the methodology is demonstrated using real data from the COVID-19 epidemic in Rio de Janeiro, Brazil, and the calibrated model provides consistent descriptions of the available data and accurate extrapolations for future forecasts, making it appealing for real-time epidemic modeling.

NONLINEAR DYNAMICS (2023)

Article Engineering, Mechanical

Reinforcement learning and approximate Bayesian computation (RL-ABC) for model selection and parameter calibration of time-varying systems

T. G. Ritto, S. Beregi, D. A. W. Barton

Summary: This paper extends the RL-ABC methodology to time-varying systems by proposing new features to tackle slowly-varying systems and detect abrupt changes. The algorithm detects system changes by monitoring models' acceptance. Experimental data from a test rig with non-linear characteristics is used to test the proposed strategy, which is able to detect changes and update parameter estimation and model predictions.

MECHANICAL SYSTEMS AND SIGNAL PROCESSING (2023)

Article Robotics

Sim-to-Real Model-Based and Model-Free Deep Reinforcement Learning for Tactile Pushing

Max Yang, Yijiong Lin, Alex Church, John Lloyd, Dandan Zhang, David A. W. Barton, Nathan F. Lepora

Summary: This paper proposes a deep reinforcement learning approach for object pushing using tactile sensing without visual input, which enables accurate pushing policies with a limited sample of goals. The results show that precise and reliable policies can be obtained for a variety of unseen objects and pushing scenarios without domain randomization. Furthermore, the model-free policy outperforms the model-based planner in harsh pushing conditions, generating shorter and more reliable pushing trajectories.

IEEE ROBOTICS AND AUTOMATION LETTERS (2023)

No Data Available