Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Misleading morphologies and the importance of sequencing type specimens for resolving coralline taxonomy (Corallinales, Rhodophyta):Pachyarthron cretaceumisCorallina officinalis

(2014) Katharine R. Hind et al.   JOURNAL OF PHYCOLOGY

Complete mitochondrial genome of Pyropia yezoensis: reasserting the revision of genus Porphyra

(2013) Fanna Kong et al.   Mitochondrial DNA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete sequence and genetic features of the mitochondrial genome of Pyropia tenera (Rhodophyta)

(2013) Mi Sook Hwang et al.   Plant Biotechnology Reports

Complete Sequence and Analysis of Plastid Genomes of Two Economically Important Red Algae: Pyropia haitanensis and Pyropia yezoensis

(2013) Li Wang et al.   PLoS One

Comment on “Acquiring DNA sequence data from dried archival red algae (Florideophyceae) for the purpose of applying available names to contemporary genetic species: a critical assessment” 1Appears in Botany 90(3): 191–203. doi:10.1139/b11-079.

(2012) Jeffery R. Hughey et al.   Botany

A SURVEY OF BANGIALES (RHODOPHYTA) BASED ON MULTIPLE MOLECULAR MARKERS REVEALS CRYPTIC DIVERSITY1

(2012) Hana Kucera et al.   JOURNAL OF PHYCOLOGY

The complete mitochondrial genome ofPyropia haitanensisChang et Zheng

(2012) Yunxiang Mao et al.   Mitochondrial DNA

Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture

(2012) David R. Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

(2012) Toshiaki Namiki et al.   NUCLEIC ACIDS RESEARCH

A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)1

(2011) Judith E. Sutherland et al.   JOURNAL OF PHYCOLOGY

New, resurrected and redefined species of Mastocarpus (Phyllophoraceae, Rhodophyta) from the northeast Pacific

(2011) Sandra C Lindstrom et al.   PHYCOLOGIA

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

DNA Damage in Plant Herbarium Tissue

(2011) Martijn Staats et al.   PLoS One

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

(2010) Wenjie Deng et al.   BIOTECHNIQUES

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Herbaria are a major frontier for species discovery

(2010) D. P. Bebber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Molecular Sequencing of Northeast Pacific Type Material Reveals Two Earlier Names for Prionitis Lyallii, Prionitis Jubata and Prionitis Sternbergii, with Brief Comments on Grateloupia Versicolor (Halymeniaceae, Rhodophyta)

(2008) Paul W. Gabrielson   PHYCOLOGIA