A Coarse-Grained Protein Model in a Water-like Solvent

Modeling simple amphiphilic solutes in a Jagla solvent

(2012) Zhiqiang Su et al.   JOURNAL OF CHEMICAL PHYSICS

Potential of mean force between hydrophobic solutes in the Jagla model of water and implications for cold denaturation of proteins

(2012) Moumita Maiti et al.   JOURNAL OF CHEMICAL PHYSICS

Thermodynamics and Kinetics of the Hairpin Ribozyme from Atomistic Folding/Unfolding Simulations

(2011) Lucas G. Nivón et al.   JOURNAL OF MOLECULAR BIOLOGY

Thermal and Structural Stability of Adsorbed Proteins

(2010) Sumit Sharma et al.   BIOPHYSICAL JOURNAL

Conformational Transitions of Adsorbed Proteins on Surfaces of Varying Polarity

(2010) Gaurav Anand et al.   LANGMUIR

Collapse Dynamics of Copolymers in a Poor Solvent: Influence of Hydrodynamic Interactions and Chain Sequence

(2010) Tri Thanh Pham et al.   MACROMOLECULES

Systematic determination of order parameters for chain dynamics using diffusion maps

(2010) A. L. Ferguson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability effects of mutations and protein evolvability

(2009) Nobuhiko Tokuriki et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Tuning the Globular Assembly of Hydrophobic/Hydrophilic Heteropolymer Sequences

(2009) Henry S. Ashbaugh   JOURNAL OF PHYSICAL CHEMISTRY B

Stability of Tethered Proteins

(2009) Gaurav Anand et al.   LANGMUIR

Sequence periodicity and secondary structure propensity in model proteins

(2009) Giovanni Bellesia et al.   PROTEIN SCIENCE

The effect of sequence on the conformational stability of a model heteropolymer in explicit water

(2008) Bryan A. Patel et al.   JOURNAL OF CHEMICAL PHYSICS

Correspondence between phase diagrams of the TIP5P water model and a spherically symmetric repulsive ramp potential with two characteristic length scales

(2008) Zhenyu Yan et al.   PHYSICAL REVIEW E