Transcriptomic landscape of breast cancers through mRNA sequencing

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Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

RACK1 promotes breast carcinoma migration/metastasis via activation of the RhoA/Rho kinase pathway

(2010) Xi-Xi Cao et al.   BREAST CANCER RESEARCH AND TREATMENT

Basal-like and triple-negative breast cancers: a critical review with an emphasis on the implications for pathologists and oncologists

(2010) Sunil Badve et al.   MODERN PATHOLOGY

Histological types of breast cancer: How special are they?

(2010) Britta Weigelt et al.   Molecular Oncology

Advancing RNA-Seq analysis

(2010) Brian J Haas et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Breast cancer assessment tools and optimizing adjuvant therapy

(2010) Catherine Oakman et al.   Nature Reviews Clinical Oncology

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Triple-Negative Breast Cancer

(2010) William D. Foulkes et al.   NEW ENGLAND JOURNAL OF MEDICINE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Preinvasive Breast Cancer

(2009) Dennis C. Sgroi   Annual Review of Pathology-Mechanisms of Disease

TopHat: discovering splice junctions with RNA-Seq

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The Sequence Alignment/Map format and SAMtools

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RACK1 promotes breast carcinoma proliferation and invasion/metastasis in vitro and in vivo

(2009) Xi-Xi Cao et al.   BREAST CANCER RESEARCH AND TREATMENT

Triple negative breast cancers: Clinical and prognostic implications

(2009) S.J. Dawson et al.   EUROPEAN JOURNAL OF CANCER

Circos: An information aesthetic for comparative genomics

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Analysis and clinical relevance of human leukocyte antigen class I, heavy chain, and β2-microglobulin downregulation in breast cancer

(2009) Anna Morabito et al.   HUMAN IMMUNOLOGY

RACK1: A superior independent predictor for poor clinical outcome in breast cancer

(2009) Xi-Xi Cao et al.   INTERNATIONAL JOURNAL OF CANCER

Genetic characterization of breast cancer and implications for clinical management

(2009) Felipe C. Geyer et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY

The molecular underpinning of lobular histological growth pattern: a genome-wide transcriptomic analysis of invasive lobular carcinomas and grade- and molecular subtype-matched invasive ductal carcinomas of no special type

(2009) Britta Weigelt et al.   JOURNAL OF PATHOLOGY

Histological and molecular types of breast cancer: is there a unifying taxonomy?

(2009) Britta Weigelt et al.   Nature Reviews Clinical Oncology

RNA processing and its regulation: global insights into biological networks

(2009) Donny D. Licatalosi et al.   NATURE REVIEWS GENETICS

Basal-Like Breast Cancer: A Critical Review

(2008) Emad A. Rakha et al.   JOURNAL OF CLINICAL ONCOLOGY

Prognostic Significance of Nottingham Histologic Grade in Invasive Breast Carcinoma

(2008) Emad A. Rakha et al.   JOURNAL OF CLINICAL ONCOLOGY

Breast cancer special types: why bother?

(2008) JS Reis-Filho et al.   JOURNAL OF PATHOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The role of molecular analysis in breast cancer

(2008) Felipe C. Geyer et al.   PATHOLOGY