Fitting occupancy models with E-SURGE: hidden Markov modelling of presence-absence data

unmarked: AnRPackage for Fitting Hierarchical Models of Wildlife Occurrence and Abundance

(2015) Ian Fiske et al.   Journal of Statistical Software

Inferring seed bank from hidden Markov models: new insights into metapopulation dynamics in plants

(2013) Hélène Fréville et al.   JOURNAL OF ECOLOGY

Estimating demographic parameters from capture-recapture data with dependence among individuals within clusters

(2013) Rémi Choquet et al.   Methods in Ecology and Evolution

Advances and applications of occupancy models

(2013) Larissa L. Bailey et al.   Methods in Ecology and Evolution

A hybrid symbolic-numerical method for determining model structure

(2012) R. Choquet et al.   MATHEMATICAL BIOSCIENCES

Estimating demographic parameters using hidden process dynamic models

(2012) Olivier Gimenez et al.   THEORETICAL POPULATION BIOLOGY

Comparing profile methods and site-occupancy modelling for the study of occurrence of an elusive species

(2011) Jonathan Rolland et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

A new parameterization for estimating co-occurrence of interacting species

(2010) J. Hardin Waddle et al.   ECOLOGICAL APPLICATIONS

Individual heterogeneity in studies on marked animals using numerical integration: capture–recapture mixed models

(2010) O. Gimenez et al.   ECOLOGY

Automatic generation of multistate capture-recapture models

(2009) Rémi Choquet   CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE

Modeling species occurrence dynamics with multiple states and imperfect detection

(2009) Darryl I. MacKenzie et al.   ECOLOGY