PASTIS: an R package to facilitate phylogenetic assembly with soft taxonomic inferences

phyloGenerator: an automated phylogeny generation tool for ecologists

(2013) William D. Pearse et al.   Methods in Ecology and Evolution

Building megaphylogenies for macroecology: taking up the challenge

(2012) Cristina Roquet et al.   ECOGRAPHY

The global diversity of birds in space and time

(2012) W. Jetz et al.   NATURE

A New Method for Handling Missing Species in Diversification Analysis Applicable to Randomly or Nonrandomly Sampled Phylogenies

(2012) Natalie Cusimano et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A phylogeny of Cenozoic macroperforate planktonic foraminifera from fossil data

(2011) Tracy Aze et al.   BIOLOGICAL REVIEWS

Estimating phylogenies for species assemblages: A complete phylogeny for the past and present native birds of New Zealand

(2011) Robert Lanfear et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny and Temporal Diversification of Darters (Percidae: Etheostomatinae)

(2011) Thomas J. Near et al.   SYSTEMATIC BIOLOGY

A simple polytomy resolver for dated phylogenies

(2011) Tyler S. Kuhn et al.   Methods in Ecology and Evolution

Functional trait and phylogenetic tests of community assembly across spatial scales in an Amazonian forest

(2010) Nathan J. B. Kraft et al.   ECOLOGICAL MONOGRAPHS

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

(2009) Mette E. Steeman et al.   SYSTEMATIC BIOLOGY

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Tempo and Mode of Diversification of Lake Tanganyika Cichlid Fishes

(2008) Julia J. Day et al.   PLoS One

Phylogenetic distributions of British birds of conservation concern

(2008) G. H Thomas   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A common tendency for phylogenetic overdispersion in mammalian assemblages

(2008) N. Cooper et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES