marked:anRpackage for maximum likelihood and Markov Chain Monte Carlo analysis of capture-recapture data

Unifying Optimization Algorithms to Aid Software System Users:optimxforR

(2015) John C. Nash et al.   Journal of Statistical Software

Incorporating individual variability into mark-recapture models

(2012) Jessica H. Ford et al.   Methods in Ecology and Evolution

ProgramSPACECAP: software for estimating animal density using spatially explicit capture-recapture models

(2012) Arjun M. Gopalaswamy et al.   Methods in Ecology and Evolution

BaSTA: an R package for Bayesian estimation of age-specific survival from incomplete mark-recapture/recovery data with covariates

(2012) Fernando Colchero et al.   Methods in Ecology and Evolution

Age-specific recruitment and natality of California sea lions at San Miguel Island, California

(2011) Sharon R. Melin et al.   MARINE MAMMAL SCIENCE

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

(2011) David A. Fournier et al.   OPTIMIZATION METHODS & SOFTWARE

Individual heterogeneity in studies on marked animals using numerical integration: capture–recapture mixed models

(2010) O. Gimenez et al.   ECOLOGY

Spatially Explicit Maximum Likelihood Methods for Capture-Recapture Studies

(2007) D. L. Borchers et al.   BIOMETRICS