The mean and variance of phylogenetic diversity under rarefaction

Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size

(2012) Anne Chao et al.   ECOLOGY

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

(2012) R. K. Colwell et al.   Journal of Plant Ecology

Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography

(2012) CALEB D. PHILLIPS et al.   MOLECULAR ECOLOGY

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

(2012) Sujatha Srinivasan et al.   PLoS One

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Phylogenetic Diversity Theory Sheds Light on the Structure of Microbial Communities

(2012) James P. O'Dwyer et al.   PLoS Computational Biology

Beyond taxonomic diversity patterns: how do α, β and γ components of bird functional and phylogenetic diversity respond to environmental gradients across France?

(2011) Christine N. Meynard et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Phylogenetic diversity as a window into the evolutionary and biogeographic histories of present-day richness gradients for mammals

(2011) T. J. Davies et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Spatial patterns of phylogenetic diversity

(2010) Hélène Morlon et al.   ECOLOGY LETTERS

Resemblance in phylogenetic diversity among ecological assemblages

(2010) David A. Nipperess et al.   JOURNAL OF VEGETATION SCIENCE

Phylogenetic diversity measures based on Hill numbers

(2010) A. Chao et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A New Phylogenetic Diversity Measure Generalizing the Shannon Index and Its Application to Phyllostomid Bats

(2009) Benjamin Allen et al.   AMERICAN NATURALIST

The Cladistic Basis for the Phylogenetic Diversity (PD) Measure Links Evolutionary Features to Environmental Gradients and Supports Broad Applications of Microbial Ecology’s “Phylogenetic Beta Diversity” Framework

(2009) Daniel Faith et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phylogenetic endemism: a new approach for identifying geographical concentrations of evolutionary history

(2009) DAN ROSAUER et al.   MOLECULAR ECOLOGY

Using Phylogenetic, Functional and Trait Diversity to Understand Patterns of Plant Community Productivity

(2009) Marc W. Cadotte et al.   PLoS One

Discovering and rediscovering the sample-based rarefaction formula in the ecological literature

(2008) A. Chiarucci et al.   COMMUNITY ECOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Distribution of phylogenetic diversity under random extinction

(2007) Beáta Faller et al.   JOURNAL OF THEORETICAL BIOLOGY