Treebase: an R package for discovery, access and manipulation of online phylogenies

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

(2012) Carl Boettiger et al.   EVOLUTION

rfishbase: exploring, manipulating and visualizing FishBase data from R

(2012) C. Boettiger et al.   JOURNAL OF FISH BIOLOGY

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

(2012) Rutger A. Vos et al.   SYSTEMATIC BIOLOGY

BIO::Phylo-phyloinformatic analysis using perl

(2011) Rutger A Vos et al.   BMC BIOINFORMATICS

A NEW PHYLOGENETIC METHOD FOR IDENTIFYING EXCEPTIONAL PHENOTYPIC DIVERSIFICATION

(2011) Liam J. Revell et al.   EVOLUTION

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

NEUTRAL BIODIVERSITY THEORY CAN EXPLAIN THE IMBALANCE OF PHYLOGENETIC TREES BUT NOT THE TEMPO OF THEIR DIVERSIFICATION

(2011) T. Jonathan Davies et al.   EVOLUTION

LINEAGE DIVERSIFICATION AND MORPHOLOGICAL EVOLUTION IN A LARGE-SCALE CONTINENTAL RADIATION: THE NEOTROPICAL OVENBIRDS AND WOODCREEPERS (AVES: FURNARIIDAE)

(2011) Elizabeth P. Derryberry et al.   EVOLUTION

Data archiving is a good investment

(2011) Heather A. Piwowar et al.   NATURE

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reproducible Research in Computational Science

(2011) R. D. Peng   SCIENCE

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

(2011) Emma E. Goldberg et al.   SYSTEMATIC BIOLOGY

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

Evolutionary informatics: unifying knowledge about the diversity of life

(2011) Cynthia S. Parr et al.   TRENDS IN ECOLOGY & EVOLUTION

Data Archiving

(2010) Michael C. Whitlock et al.   AMERICAN NATURALIST

adephylo: new tools for investigating the phylogenetic signal in biological traits

(2010) Thibaut Jombart et al.   BIOINFORMATICS

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

THE ADVENT OF MANDATORY DATA ARCHIVING

(2010) Daphne J. Fairbairn   EVOLUTION

Quantitative Traits and Diversification

(2010) Richard G. FitzJohn   SYSTEMATIC BIOLOGY

Diversity dynamics: molecular phylogenies need the fossil record

(2010) Tiago B. Quental et al.   TRENDS IN ECOLOGY & EVOLUTION

The Ecological Dynamics of Clade Diversification and Community Assembly

(2008) Mark A. McPeek   AMERICAN NATURALIST

Climate, Niche Evolution, and Diversification of the “Bird‐Cage” Evening Primroses (Oenothera, Sections Anogra and Kleinia)

(2008) Margaret E. K. Evans et al.   AMERICAN NATURALIST

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

Density-Dependent Cladogenesis in Birds

(2008) Albert B Phillimore et al.   PLOS BIOLOGY